PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.3288s0094.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 299aa MW: 33981.2 Da PI: 6.2781

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.3288s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.3	2e-25	133	182	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +s+e++s+yF+++i++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Bostr.3288s0094.1.p 133 NALSMETVSRYFYMSITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 182 789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.847	104	203	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-20	135	182	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MADHKTKEEK PFSFLTQSPS FDHSSLTYPL LDWEEDLLAL HESSASQAFP LTTTSLPLPD 60 LEPLSEDVLN SYSSASWNET EQNRGDGASS EKKTEYGAVQ ETTKKRKINE RRREHSVRII 120 SDITTYTTYP ASNALSMETV SRYFYMSITQ AAMELNVGLT LLKRRCRELG IRRWPHRKLM 180 SLKTLISNVK ELQKMEGEEN AEKLQNALEM LEKEKRMIEE LPDLEFEDKT KRLRQACFKA 240 NHKRKKKRNL KSDQSQIPSC SNSGSVASDG SVNEAGMESD EEVKYLLCGF SSEFSSGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.3288s0094.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428433.1	0.0	PREDICTED: protein RKD2
Swissprot	Q9CA66	1e-176	RKD2_ARATH; Protein RKD2
TrEMBL	R0GEJ6	1e-176	R0GEJ6_9BRAS; Uncharacterized protein
STRING	Bostr.3288s0094.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-162	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Bostr.3288s0094.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]