PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0205.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 302aa    MW: 34709.5 Da    PI: 9.2788
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0205.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.68.4e-33141072103
                          HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
         HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                          Fl+k+y+++ed+++++++sw  ++ ++fvv+ + efa+++Lp++ kh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+
  Bostr.3148s0205.1.p  14 FLTKTYQLIEDPSTDHIVSWGgDEDSTFVVWRPPEFARDLLPSFCKHNNFSSFVRQLNTYGFRKIAPDR---------WEFANEYFKRGE 94 
                          9********************9999******************************************99.........************ PP

                          XXXXXXXXXXXXX CS
         HSF_DNA-bind  91 kellekikrkkse 103
                          k+ll +i+r+k++
  Bostr.3148s0205.1.p  95 KNLLYEIHRRKTS 107
                          **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.3E-5310104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.95E-3111104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.3E-3511104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2814104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMVDAECKAV PAPFLTKTYQ LIEDPSTDHI VSWGGDEDST FVVWRPPEFA RDLLPSFCKH  60
NNFSSFVRQL NTYGFRKIAP DRWEFANEYF KRGEKNLLYE IHRRKTSPPL QQPPPLYFPG  120
RNFFSLPPHL TFSPPSPPRS TVHYATLMED NKTLRRSNMV LMSELAHMKK LYNDIIYFVQ  180
NHAKAIAPSS ALLNHAFSHQ QKGLRGIYNT ATGSRAFDSS SSQSSITDDT FINRECNTKK  240
MKLFGVSLSS LSSTDKKFHQ YPLKSQTTKD RLAVEKSDDV ALDLMTRGWE WHWCLICTHF  300
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-191010717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0205.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891331.11e-106heat stress transcription factor B-4
SwissprotQ9C6351e-101HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD7KPW31e-104D7KPW3_ARALL; Uncharacterized protein
STRINGBostr.3148s0205.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-91heat shock transcription factor B4