PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3148s0150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NF-YC | ||||||||
Protein Properties | Length: 129aa MW: 14349.8 Da PI: 10.2674 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 50.5 | 4.4e-16 | 10 | 89 | 19 | 97 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 e+P+ r+kki+k d+d+++i +ea l++ + elf+ l+ +s + + e+kr+t+ + +av+r + + dfl+d p Bostr.3148s0150.1.p 10 PEFPVGRVKKIMKLDKDINKINSEALHLVTYSTELFLHFLAEKSAVVTAEKKRKTVTLDHLRTAVKRHQpTCDFLLDSLP 89 589**************************************************************9976489*****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.47E-19 | 8 | 100 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-20 | 11 | 74 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.3E-21 | 12 | 89 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MAEEESSIRP EFPVGRVKKI MKLDKDINKI NSEALHLVTY STELFLHFLA EKSAVVTAEK 60 KRKTVTLDHL RTAVKRHQPT CDFLLDSLPL PAPPLPHTKT VKVPPPPPVG TRRIEDFFTK 120 GKAKADSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3148s0150.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017070 | 5e-83 | AB017070.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNL12. | |||
GenBank | AB493774 | 5e-83 | AB493774.1 Arabidopsis thaliana At5g43250 mRNA for hypothetical protein, partial cds, clone: RAAt5g43250. | |||
GenBank | CP002688 | 5e-83 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199139.1 | 2e-73 | nuclear factor Y, subunit C13 | ||||
TrEMBL | A0A178UGE2 | 1e-72 | A0A178UGE2_ARATH; NF-YC13 | ||||
STRING | Bostr.3148s0150.1.p | 2e-87 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-59 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3148s0150.1.p |