PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3148s0041.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HB-other
Protein Properties Length: 1701aa    MW: 191480 Da    PI: 4.9791
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3148s0041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-182278157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         ++kR   t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k
  Bostr.3148s0041.1.p 22 KSKRKMKTAAQLEVLENTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 78
                         679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-17678IPR009057Homeodomain-like
SuperFamilySSF466894.28E-151678IPR009057Homeodomain-like
PROSITE profilePS5007116.3741979IPR001356Homeobox domain
SMARTSM003892.5E-162183IPR001356Homeobox domain
CDDcd000861.70E-132279No hitNo description
PfamPF000468.6E-162278IPR001356Homeobox domain
PROSITE profilePS5082715.925525584IPR018501DDT domain
SMARTSM005712.0E-22525584IPR018501DDT domain
PfamPF027912.0E-16526581IPR018501DDT domain
PfamPF050663.1E-16707775IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156123.2E-6910948IPR028942WHIM1 domain
PfamPF156131.0E-1210831155IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1701 aa     Download sequence    Send to blast
MEGGSEEAEK NKTTPEGGGE NKSKRKMKTA AQLEVLENTY AAEPYPSEAI RADLSVKLNL  60
SDRQLQMWFC HRRLKDRKST TPSKRQRKEL ITPMAVESSK PAVNAGDMVA GNEFDSRRAA  120
RGSSSGGVTV VRRFNEPSPA EVRAVGYVEA QLGGRLRDNG PILGMEFDPL PPGAFGMPIE  180
MPSHRKATRQ AFETSLYVRS DVKPVKDHVR PIREYQFLPD LPSSRSDHSE RVSPSHHFGV  240
PLDASVMRAS AMSAGHRDDY KISPQIPNLN LATHQGKPGH VYSPDLAEFD SPYQKSYMDT  300
AAHRNLNDHP IHEDPFVKSE REVGNEDEDD DALQLERKRK NEEARISREV EAHEKRMRRE  360
LEKQDMLRRK REEQIRKEME RQDRERRKEE ERLLRERQRE EERYLKEQMR EMQRREKFLK  420
KETIRAEKMR QKEEMRREKE VARLKAANER AIARKIAKES MELIEDERLE LMEVAALTKG  480
LPSMLALDFE TLQNLDEYRD KQALFPPTSV KLKKPFTVKP WNGSDENVAN LLMVWRFLIT  540
FVDVLGLWPF TLDEFAQAFH DYDPRLMGEI HIVLLKTIIK DIEGVARTLL TGVGANQNAA  600
SNPGGGHPHV VEGAYAWGFD IRSWRRNLNV FTWPEILRQL ALSAGLGPQL KKRNIKTVSV  660
HDENEANNSE NVIFNLRKGV AAENAFAKMQ ERGLSNPRRS RHRLTPGTVK FAAFHVLSLE  720
GEKGLTILEV AEKIQKSGLR DLTTSRTPEA SVAAALSRDT KLFERVAPST YCVRASYRKD  780
AGDAETIFAE ARERIRAFKS GITDVEDVDD AERDEDSESD VGDDPEVDLN PKKEDPDALE  840
IENSIKVEPV LENGKLDTVT MTTKPGLPLT PSLPEDMKDE KRDDILEDQP LKDAVANDED  900
NACFDESKLG EQWVQGLVEG DYSNLSSEER LNALVALIGI AIEGNTIRIA LEERLEVASA  960
LKKQMWGEVQ LDKRWKEESL IRANYLSYPT AKPGLNIATP ASGNQESSSA DVTPISSQDP  1020
LSLPQTDVNN VIAGPSLQLQ ENVSGMENLQ YQQQQGYTAD RERLRAQLKA YVGYKAEELY  1080
VYRSLPLGQD RRRNRYWRFS ASASRNDPGC GRIFVELQDG RWRLIDSEEG FDYLVKSLDV  1140
RGVRESHLHF MLLKIEASFK EAVRRNVEAN PGLCSISSSL DSDTAEISTT FKIELGDSNA  1200
IERCSVLQRF QSFEKWMWDN MLHPGALSAF KYGAKQSSPL FRICRICAEL HFVEDICCPS  1260
CGQMRAGPDV GELCFAEQVA QLGDNSRGGD AGFILRSSIL SPLRIRLLKI QLALVEASLP  1320
PEGLEAFWTA NLRKSWGLKL LSSSSPEELN QVLTTLEAAL KRDFLSSNFE TTSELLGLPE  1380
EALASDFTCV VNVLPWIPKT TGGVALRLFE FDSSIVYTPD QNNDPQKDKE SEDFVGLETN  1440
FLRNVQEKDV METPVQVAYK QEENWTDPGL GGVSSSGRGG RPPRGRGRPR SRGSGKKPAV  1500
SGKPPQGTAN STAEAMLRPR AQPRGRKNGR RSGTKGRKRP TKGTLGISNE VVGGRQAKEV  1560
AVTAKTTLPD NEDDWIETPE LQDDDGEASS SGRSFQYKDY DDDDVMAPID DFDDGGESSK  1620
LVGRGEFSLH SDDEYEEEEE EEEEEDMNTK MDVNVDDEDE DYINDDSYGR EQLEISNDAA  1680
RKRFMFEDPD LTSSSSSDFH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
115251539RKNGRRSGTKGRKRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.3148s0041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0428930.0AY042893.1 Arabidopsis thaliana Unknown protein (MLN1.10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279558.10.0homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLR0EUK20.0R0EUK2_9BRAS; Uncharacterized protein
STRINGBostr.3148s0041.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator