PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.3148s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21800.6 Da PI: 10.6565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++ a+++++g Bostr.3148s0037.1.p 30 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRG 79 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-14 | 30 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-39 | 30 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 30 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 30 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.71E-30 | 30 | 87 | No hit | No description |
PRINTS | PR00367 | 2.8E-11 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAPKQVNGSN AAVSGGGGRK TTETMRKEVH FRGVRKRPWG RYAAEIRDPG KKTRVWLGTF 60 DTAEEAARAY DTAAREFRGS KAKTNFPLPG ESTTVNDGGE NGSYINRTTV TAAREMTRQR 120 FPFACHRERN VVGGYAAAGF FFDPSRAAAL RAELARVYPV RFDPVNIELS IGIRETVKVE 180 PRRELNLDLN LAPPVDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 30 | 88 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-22 | 27 | 88 | 2 | 64 | ATERF1 |
3gcc_A | 5e-22 | 27 | 88 | 2 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.3148s0037.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005239 | 0.0 | AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1. | |||
GenBank | AB047648 | 0.0 | AB047648.1 Arabidopsis thaliana AtERF9 gene for ERF domain protein 9, complete cds. | |||
GenBank | AY560856 | 0.0 | AY560856.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g44210) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867815.1 | 1e-128 | ethylene-responsive transcription factor 9 | ||||
Swissprot | Q9FE67 | 1e-127 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | D7MN18 | 1e-127 | D7MN18_ARALL; Uncharacterized protein | ||||
STRING | Bostr.3148s0037.1.p | 1e-141 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-101 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.3148s0037.1.p |
Publications ? help Back to Top | |||
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