PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0431.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 160aa    MW: 18184 Da    PI: 9.4598
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0431.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.11.1e-17131022100
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           F   ly+ ++d++++++isws++g+sf+v+d eef + v+ + F  s+f+ F   L+ +gF+kv++e++         e++++ F +gk
  Bostr.30275s0431.1.p  13 FAAVLYRAVDDPSTDSIISWSQDGKSFIVWDVEEFCR-VVIHKFGLSKFQFFAHRLKSFGFTKVESEHQ--------LEYANDDFVRGK 92 
                           77889********************************.88889***********************996........6*********** PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrk 100
                            el  +i+ +
  Bostr.30275s0431.1.p  93 PELAVQIEIR 102
                           **99998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.8E-199102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-2011100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-171398IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-61336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-1713100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-66375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MARRPVLEGR RYFAAVLYRA VDDPSTDSII SWSQDGKSFI VWDVEEFCRV VIHKFGLSKF  60
QFFAHRLKSF GFTKVESEHQ LEYANDDFVR GKPELAVQIE IRRLKSFITS PPMNLEEFPP  120
GTVTPEMKIA SLLATEEKDK AIANKKGKAI TKDLSKLTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0431.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565203.11e-32heat stress transcription factor A-4a-like
TrEMBLA0A3N6TTD33e-30A0A3N6TTD3_BRACR; Uncharacterized protein
STRINGBostr.30275s0431.1.p1e-114(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.14e-22HSF family protein