PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0364.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 237aa MW: 28568.4 Da PI: 10.6323 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 27.5 | 8.3e-09 | 4 | 54 | 38 | 97 |
HHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 38 kkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 k +L+++Fk++n++ F Ln+ gF+k+++ + weF++++F +g+ +l+++i Bostr.30275s0364.1.p 4 KYLLQRFFKTNNLEFFFSYLNIHGFRKIESGK---------WEFANDNFVRGQPHLINNI 54 6789************************9988.........****************998 PP | |||||||
2 | HSF_DNA-bind | 33.5 | 1.1e-10 | 92 | 143 | 4 | 55 |
HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHH CS HSF_DNA-bind 4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvR 55 +k ye+++d + + +isws++g+sf++++++ef k++L ++ ++ F Bostr.30275s0364.1.p 92 HKFYEMVDDTSSDAIISWSQSGKSFIIWNPREFCKDLLRRFSSSLHIPLFFH 143 89*********************************99988765555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 4.1E-4 | 3 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.21E-11 | 3 | 54 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.9E-10 | 3 | 54 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.1E-9 | 4 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 1.7E-6 | 88 | 171 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.72E-11 | 91 | 160 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.1E-12 | 91 | 148 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.4E-9 | 91 | 164 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
KNSKYLLQRF FKTNNLEFFF SYLNIHGFRK IESGKWEFAN DNFVRGQPHL INNIISYIIE 60 QRVLVDQRMD MIKARQLLML QVKEVEDQWP PHKFYEMVDD TSSDAIISWS QSGKSFIIWN 120 PREFCKDLLR RFSSSLHIPL FFHKLKWEFA NDKFCSGSTS PYGIIRSNHR EKNDQLRKKY 180 ERVKKMREAR DLFKLQVKEM LDMRKKMRKA ARKKMKKAKE VKEHEVRLQH IGLCKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0364.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493684 | 4e-51 | AB493684.1 Arabidopsis thaliana At4g18870 mRNA for hypothetical protein, partial cds, clone: RAAt4g18870. | |||
GenBank | AL021711 | 4e-51 | AL021711.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F13C5 (ESSA project). | |||
GenBank | AL161549 | 4e-51 | AL161549.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49. | |||
GenBank | CP002687 | 4e-51 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870020.1 | 1e-100 | heat stress transcription factor C-1 | ||||
TrEMBL | D7M9E4 | 3e-99 | D7M9E4_ARALL; Predicted protein | ||||
STRING | Bostr.30275s0364.1.p | 1e-175 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20171 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 2e-79 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0364.1.p |