PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0319.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 304aa    MW: 34507.7 Da    PI: 5.833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0319.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18109159255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  Bostr.30275s0319.1.p 109 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 159
                           8********.**********44465..************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-29108169IPR001471AP2/ERF domain
SMARTSM003807.6E-35109174IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-20109169IPR016177DNA-binding domain
PROSITE profilePS5103222.774109168IPR001471AP2/ERF domain
CDDcd000182.17E-28109168No hitNo description
PfamPF008474.9E-12109159IPR001471AP2/ERF domain
PRINTSPR003676.9E-11110121IPR001471AP2/ERF domain
PRINTSPR003676.9E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWAN FIRKPQTDKR SVNVPEVSRT WEALPTLDNT PEDSKESLPS  60
LNMSMEAQEW TEILDAIASF PNKTNHDPLT NPTIDSCSLS SRVSRKTRKY RGVRRRPWGK  120
FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT KKAHTNFQLE AVIKAMEMDC  180
GPNYYPINSS NTFQSLRSGH KIGSRTEKEA IRTYDKVVDG MGDNHCTLSY RSTKEYTETC  240
GLLGSGETWL GSRKRRRSDE DFMFQEVEMK KTVTEEETLC DVFGLFEFEE LGSDYLDTLL  300
SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23106169264ATERF1
3gcc_A1e-23106169264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256RKRRR
2252257RKRRRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0319.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608680.0AY560868.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g18450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867990.10.0ethylene-responsive transcription factor ERF091
SwissprotO495150.0ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLD7MCS00.0D7MCS0_ARALL; Uncharacterized protein
STRINGBostr.30275s0319.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-156ERF family protein