PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.30275s0311.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 41412.9 Da PI: 8.3518 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.3 | 6.8e-39 | 50 | 186 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.. 88 g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++ + +++++++++++ + + Bostr.30275s0311.1.p 50 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNTN-FPTDDENQNQNQTLTVAta 136 689*************************************************************.3333.3334444444443333356 PP TCP 89 kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknkl 136 ++ +++a +s++++++++s l+l++ e r kar+rarert+++ + ++++ Bostr.30275s0311.1.p 137 NSLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDHN 186 666666657888888888899**999***************999888665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.8E-37 | 51 | 182 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.221 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.205 | 162 | 183 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MFPKLGDDGM IGDLMKNNNG DVVDNNGNNN NRLSRWHHNS SRIIRVSRAS GGKDRHSKVL 60 TSKGPRDRRV RLSVSTALQF YDLQDRLGYD QPSKAVEWLI KAAEDSISEL PSLNNTNFPT 120 DDENQNQNQT LTVATANSLS KSACSSNSDT SKNSSGLSLS RSELRDKARE RARERTAKET 180 KERDHNHTSF TDLLNSGSDP VNSNRQWMAQ APAPAPSSSP MEYFSSGLIL GSGQQTHFPI 240 STNSHPFSSI SDHHHHHHPH QEFLFVTDHL ISPAGSNGGA FNLDFNMSTS SGAGAAVPAA 300 SGGGFSGFNR GTLQSNSTNH QHQSFLANLH RFPSSEGGGG PLFGALPAEN HHHNHNHQFQ 360 LYYENGCRNS SDHKGKGKN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-23 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-23 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.30275s0311.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF367270 | 0.0 | AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AF367292 | 0.0 | AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds. | |||
GenBank | AL021710 | 0.0 | AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project). | |||
GenBank | AL161548 | 0.0 | AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873920.1 | 0.0 | transcription factor TCP2 | ||||
Swissprot | Q93V43 | 0.0 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | D7MCT1 | 0.0 | D7MCT1_ARALL; Uncharacterized protein | ||||
STRING | Bostr.30275s0311.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7615 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-135 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.30275s0311.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|