PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0303.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HRT-like | ||||||||
Protein Properties | Length: 205aa MW: 22949 Da PI: 7.9707 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 63.3 | 3.5e-20 | 172 | 202 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG++l++GsvC++ Pv+gRKRCeeHKGmRi Bostr.30275s0303.1.p 172 ICGIKLDNGSVCEKVPVEGRKRCEEHKGMRI 202 8*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MYLFFSRFSK LSARRGNSCK ICDYRDYCSG SARVPVAHAP DDHHDLDFWN VKQALSAQFL 60 AFAAAEAKQP KWWEKKAGPG IPCEVRFIRE DYCSGSARVP VAHAPDDHHD LDFWNVKQAL 120 SVQFLAFAAA EAKQPKWWEK KAGPGIPCEV HFIREDHGSS ENVQSATISQ IICGIKLDNG 180 SVCEKVPVEG RKRCEEHKGM RITS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0303.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049171 | 1e-44 | AL049171.1 Arabidopsis thaliana DNA chromosome 4, BAC clone (ESSA project). | |||
GenBank | AL049483 | 1e-44 | AL049483.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20B18 (ESSA project). | |||
GenBank | AL161564 | 1e-44 | AL161564.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 64. | |||
GenBank | CP002687 | 1e-44 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Y10013 | 1e-44 | Y10013.1 A.thaliana mRNA for putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Bostr.30275s0303.1.p | 1e-151 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26170.1 | 6e-22 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0303.1.p |