PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0232.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 321aa    MW: 36716.9 Da    PI: 9.6164
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0232.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31159212255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  Bostr.30275s0232.1.p 159 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 212
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-15156213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27157213IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23159213IPR006447Myb domain, plants
PfamPF002499.7E-7160211IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MELFPSQPDL YLKISRRREE KENQEQEVER RLGFRRKASD SDRKSSGNLI HTLQFTSNNE  60
PNKIYNNQEH NESLDQDLRS MLMMRPIRGI PLYQNQVLDH HYYSSTSPTP FFFSEINGQH  120
ASRRVITNPN CNFNLHHRNR CQVQPQPPRF TAKRGVRAPR MRWTTTLHAH FVHAVQLLGG  180
HERATPKSVL ELMDVQDLTL AHVKSHLQMY RTIKSTERPT TSSGQSDTCE NGSQVKSERE  240
ARDLQGLWNN SSSEARFHLK AKASSGVDIS SNENKWKNLD GRCPSNERLS SESSSLTGTR  300
PETETPNLDF TLATPNLLAP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16160214357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16160214357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16160214357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16160214357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16160214458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0232.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486900.0AY048690.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI3 (KAN3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449573.10.0PREDICTED: probable transcription factor KAN3 isoform X1
SwissprotQ941I20.0KAN3_ARATH; Probable transcription factor KAN3
TrEMBLR0F5I80.0R0F5I8_9BRAS; Uncharacterized protein
STRINGBostr.30275s0232.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-170G2-like family protein