PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0218.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GATA | ||||||||
Protein Properties | Length: 515aa MW: 57631.9 Da PI: 8.0129 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.1 | 3.7e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Bostr.30275s0218.1.p 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 2.31E-16 | 6 | 51 | No hit | No description |
Pfam | PF00320 | 4.9E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.095 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 3.2E-10 | 269 | 363 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGDENDDH 60 HRFQRMKSIS VSNKNKDTKM LKRKAIQENI IIKRPVLEFN YGLKKGVIEE DASNRSSSGS 120 AVSNSESCAQ FSRADGSPSQ SNAWDTTVPC KRRTCVGRPK SSSVEKLTKD LYNILQEQQS 180 SCLSVSSEED LLFENEMSMV SVEIGHGSVL MKNPHSFARE EESEASSISS IENKSSISEA 240 YSHSVKRVEM GAERGSYYGG QAIKQEQFKR TKSQTERVHV LGSHSSPLCS INLKDVFNFD 300 EFIEQFTEEE QKKLMKLLPQ IDSDNLPDSL RMMFESAQFK DNFSLFKQLI ADGVFDMSSS 360 SGAKLEDIRT FKKLALTDFN KSRLVESYYL LKEREKERGD SVTTTSKISN PNVPKNIVTI 420 KRRCEDQTQL KSESRGLMRS PKRVMKMKVT DESKVMTENN VSCFSPRSLA SVFGQEGGSA 480 VFGYEGNCSS DQDLLLLDLP SNGSFPQAEL LHQL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0218.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062562 | 0.0 | AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285659.1 | 0.0 | GATA transcription factor 26 isoform X1 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | R0F9D0 | 0.0 | R0F9D0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.30275s0218.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 0.0 | GATA transcription factor 26 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0218.1.p |