PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0196.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 332aa    MW: 38348.9 Da    PI: 8.9278
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.77.2e-1411992100
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Flkk ye+++d++++++isw  ng sf+vl++ e  +++L++  + +nf  F    + YgF+k+  ++++      + eF+ + F +gk
  Bostr.30275s0196.1.p  11 FLKKAYELVDDPSTDSIISWAPNGCSFLVLNPLECCRDLLTRRLQITNFGRF----ESYGFRKIVPSSGQ------QLEFACNDFVRGK 89 
                           9*******************************************99999877....89********9988......79*********** PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrk 100
                            elle+i  +
  Bostr.30275s0196.1.p  90 PELLERIAER 99 
                           *******877 PP
2HSF_DNA-bind51.52.7e-161752632100
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Flkk ye+++d++++++isw  ng+sfvv+++ e  +++Lp++ + +nf+ F    ++YgF+k+   +++      + eF+   F kgk
  Bostr.30275s0196.1.p 175 FLKKAYELVDDPSTDSIISWAPNGRSFVVWKPLECCRDLLPRHLQSTNFTRF----QTYGFTKIVVLSGQ------QLEFACTDFVKGK 253
                           9***********************************************9988....69*******99987......79*********** PP

                           XXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrk 100
                            elleki ++
  Bostr.30275s0196.1.p 254 PELLEKIAKR 263
                           *******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-20799IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.03E-16897IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-16997IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-121198IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004152.1E-19171263IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.83E-18172262IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-20174262IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-15175262IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-7175198IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-7213225IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDYGRNVISD FLKKAYELVD DPSTDSIISW APNGCSFLVL NPLECCRDLL TRRLQITNFG  60
RFESYGFRKI VPSSGQQLEF ACNDFVRGKP ELLERIAERY VANMKEYEER KYGALNKRLK  120
NATSREEYDL AIKEQREIFD RESRERKARL PPPQVTSTIP PFIDLAHGKN YVIDFLKKAY  180
ELVDDPSTDS IISWAPNGRS FVVWKPLECC RDLLPRHLQS TNFTRFQTYG FTKIVVLSGQ  240
QLEFACTDFV KGKPELLEKI AKRYVPQLKG AEFGALNERL KNATSEEEYD LAIKEIFARK  300
SKKRKEIMAG RRVVTSYPAQ GLEDQVYHLR I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298305RKSKKRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0196.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868068.11e-164heat stress transcription factor A-4a
TrEMBLD7MBZ41e-163D7MBZ4_ARALL; Uncharacterized protein
STRINGBostr.30275s0196.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.19e-38HSF family protein