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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.30275s0178.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
GRAS |
Protein Properties |
Length: 533aa MW: 58638.3 Da PI: 5.4808 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.30275s0178.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 408.7 | 5.5e-125 | 155 | 525 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l+e+L+e+A+av++gd++ a +L l++++s +g+p+qRl +y++e+L+arl +s+s++y+al+++e + e ++++ +++e++P
Bostr.30275s0178.2.p 155 LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYRALKCNEPT---GRELMSYMGVLYEICP 240
5789*****************************************************************9...99999999******** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
+ kf++ taN aIlea++ge+rvHiiDf+i qG Q++ L+q+L +Rp+gpp lR+Tgv++++s+ + l+ +gerL+k+ +++gvpf
Bostr.30275s0178.2.p 241 YWKFAYTTANAAILEAIAGETRVHIIDFQIAQGSQYMFLIQELGKRPGGPPLLRVTGVDDSQSTyaRGGGLSLVGERLSKLSQSCGVPF 329
************************************************************999999999******************** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
ef+ ++ + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+kslsPk+v++veqe+++n+++Fl rf+e+l+yy+
Bostr.30275s0178.2.p 330 EFHD-AVMSGCKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYT 417
****.7889999***************************************************************************** PP
GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
a+f+s++a pr++++ri+ E+++++r+ivn++ace++er+erhe l+kWr r+++aGF+ p+s++aa a+ +l+ ++++ y++ +
Bostr.30275s0178.2.p 418 AMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGKWRVRMMMAGFTGWPVSTSAAFAASEMLKAYDKN-YKLGGS 505
********************************************************************************66.****** PP
GRAS 355 sgslvlgWkdrpLvsvSaWr 374
+g+l+l Wk+rp+ ++SaW+
Bostr.30275s0178.2.p 506 EGALYLFWKRRPMATCSAWK 525
*******************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 533 aa
Download sequence Send
to blast |
MQTSQKHHSA AGLHMLYPQV YCSPQFQAID NNGFSDIPSK ENFFTLESST ASGSLPLYDS 60 PSVSITSGRS PFSPQGSQSC ISDLHPSPDN VYGSPLSGAS SFAYDEAGVK SKIRELEVSL 120 LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV 180 LEQMVSVSGS PIQRLGTYMA EGLRARLEGS GSNIYRALKC NEPTGRELMS YMGVLYEICP 240 YWKFAYTTAN AAILEAIAGE TRVHIIDFQI AQGSQYMFLI QELGKRPGGP PLLRVTGVDD 300 SQSTYARGGG LSLVGERLSK LSQSCGVPFE FHDAVMSGCK VQREHLGVEP GFAVVVNFPY 360 VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT NTSPFLSRFV ETLDYYTAMF 420 ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGKWRVR MMMAGFTGWP 480 VSTSAAFAAS EMLKAYDKNY KLGGSEGALY LFWKRRPMAT CSAWKPNPNQ IE*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK226549 | 0.0 | AK226549.1 Arabidopsis thaliana mRNA for scarecrow-like 13, clone: RAFL07-11-B03. |