PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0162.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 435aa    MW: 47959 Da    PI: 7.3035
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.3e-2134123186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++      +g  +s++qC++k+e+l+kry+ +k+++ +r  + ss++ +f  l
  Bostr.30275s0162.1.p  34 CWTDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVssssTVGGPPKSAIQCRHKIEKLRKRYRGEKQRSLNRPGKFSSSWDLFPIL 122
                           8*************************************988888899****************************9999*******987 PP

              trihelix  86 e 86 
                           +
  Bostr.30275s0162.1.p 123 D 123
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2133125No hitNo description
PROSITE profilePS500906.0863595IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSIPDDGSPV AMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR  60
AADWDDVAAA VSSSSTVGGP PKSAIQCRHK IEKLRKRYRG EKQRSLNRPG KFSSSWDLFP  120
ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRVRSKR SGKFSGGYSD SPRDVGDGYG  180
VRSRARSHMK SYGGFKPEFD SDHDSGSGFG VKRKYNGNPK VSADFDADSD DEIVLVPKAT  240
RLRAHGKPSS GDFSHGGGGG FPLKSFGDRN FASHGFKPKN FSKTEANFSQ DLDYDDEFDD  300
DRAEREGFNP RIQSSRSSSR VNGYSRKDGS YPRNTGVSNG YGSSSRFKHE QMNAAAEVES  360
NPIDEVVSSV KMLTEMFVRV ENSKMEMMRE MEKSRMEMEL KHCQMMLESQ QQIIGAFAEA  420
LSEKKSTNAR RPDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0162.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1182450.0AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283753.10.0uncharacterized protein LOC17879633
SwissprotO235500.0FRIP2_ARATH; Protein FIP2
TrEMBLR0F5C60.0R0F5C6_9BRAS; Uncharacterized protein
STRINGBostr.30275s0162.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104831828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.17e-21Trihelix family protein
Publications ? help Back to Top
  1. Sakai T, et al.
    The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots.
    Plant J., 2012. 70(2): p. 303-14
    [PMID:22122664]