PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30275s0051.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ARR-B
Protein Properties Length: 601aa    MW: 65835.3 Da    PI: 6.333
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30275s0051.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28133186155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Bostr.30275s0051.2.p 133 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 186
                           79*******************.********************************7 PP
2Response_reg333.1e-1215653109
                           CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
          Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                           mp+mdG++ll+    e  +lp+i+++a ++++ +l+ +  Ga d+l Kp+ +e+l +
  Bostr.30275s0051.2.p   1 MPDMDGFKLLEYVGLEM-DLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKN 56 
                           9************6644.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000728.2E-9156IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.7E-19194No hitNo description
CDDcd001564.80E-12161No hitNo description
PROSITE profilePS5011023.369162IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.2E-1511592IPR017053Response regulator B-type, plant
SuperFamilySSF521722.99E-15168IPR011006CheY-like superfamily
PROSITE profilePS5129411.323130189IPR017930Myb domain
SuperFamilySSF466896.27E-20131190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-30132191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24133186IPR006447Myb domain, plants
PfamPF002499.1E-9135185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPDMDGFKLL EYVGLEMDLP VIMMSADDSK SVVLKGVTHG AVDYLIKPVR IEALKNIWQH  60
VVRKKRNEWT VSEHSGGSIE DTGGDRDRQQ QREDADNNSS SVNEGNWRSS RKRKEEEVDD  120
QGDDKEDTSS LKKPRVVWSV ELHQQFVAAV NQLGVDKAVP KKILEMMNVP GLTRENVASH  180
LQKYRIYLRR LGGVSQHQGN MNHSFMTGQD PNFGPLSSMN GFDLQALAIA GQLPAQSLAQ  240
LQAAGLGQPS LTKPGMSVSP LVDQRSIFNF ENPKIRYGDG HGQTINNGNK QMNLLHGVPT  300
GMEPKQFAGS HMRVQQKIAG VRPGQNIQSS GMMLPVADQL PRGVPSMLPS LGQQPMLSSS  360
VSRRSDLTGV VAVRNSIPET NSRVLPATHS VFNNFPQDLP QNSFPLASAP GISIPVSASY  420
QEEVNSSDVN GGSSASTVAT AGYGNPSYDI FNDFSQQQQH NNNINNKLND WDLRNIGLVF  480
SHQDAAAASA AFSTSEAYSS SSTQRKRRET DATVVAEHGQ NQHPPSRNLN HLNHIYMDGG  540
SVRVKSERVA ETVTCPPATT LFHEQYNQED LMSALLKQEG IPSVDNEFDF DGYSIDNIPV  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22129191163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30275s0051.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1753780.0AK175378.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-81-O06.
GenBankAK1757370.0AK175737.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-28-G07.
GenBankAK1759590.0AK175959.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-64-J02.
GenBankAK1766140.0AK176614.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-13-O13.
GenBankDQ4735190.0DQ473519.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286049.20.0two-component response regulator ARR2
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLD7MA810.0D7MA81_ARALL; Two-component response regulator
STRINGBostr.30275s0051.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]