PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.30057s0099.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 764aa    MW: 79510.6 Da    PI: 10.4036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.30057s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-12195239144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                           r++W++eEde l+ avk++G g+W++Ia++     Rt+ q+  rw
  Bostr.30057s0099.1.p 195 RKKWSAEEDEELIAAVKRHGEGSWALIAKEEFeGERTASQLSQRW 239
                           789*************************99777789999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.196190247IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-15191243IPR009057Homeodomain-like
SuperFamilySSF466892.58E-12191245IPR009057Homeodomain-like
SMARTSM007178.0E-11194245IPR001005SANT/Myb domain
PfamPF002491.2E-9195239IPR001005SANT/Myb domain
CDDcd116602.41E-13196239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MVDNSNKKKR KEFISEADIA TLLPRYDSMT ILKLLQEMAF HAEPKMDWNE LVKKTSTGIT  60
NAREYQLLWR HLAYRDSLLP VEENAQLLND DSDMECELEA SPAVSVDVVT EAVAHVKVMA  120
ASYVPSESDI PEDSTVEAPM TINIPYGLLR GAQEPSDSCW SSRGMNITFP VSLPKAAEGH  180
NGNGLASNMA PRKRRKKWSA EEDEELIAAV KRHGEGSWAL IAKEEFEGER TASQLSQRWG  240
AIRRRCDTSN TSTQSGLQRT EAQMAANRAL SLAVGNRVPS KKLAVGTPPM LSSGTITGAQ  300
ANGANSGSTL QGQQQSQSQV QALPRAATSA PTAKSRVPAK KTTANSTSRA ELMVTANSVA  360
AAACMSGLAT VVSVPKIEPG KNAVSALVPK VEPVKTASAA SLPRPSGISL AMNAEPVKTA  420
SAASVPRPLG IISAPKAEPI KTTASAASLP RPSGIISAPE AEPVKTATSA ASFSRPSGII  480
SAPKAVLVKP AASAASLPRP SGIISAPKAE PVKPASAASL PLPSGIISVP KAEPVKTASA  540
VSLPRPSSIL SAPKADPVKN VSATATNTKA VGPLNLRHAV NGSPNHAISS SPSNKPSPMA  600
PLSKGPTIQN NSVPPSFASS RLVPTQRVPA ATVIPQKPSV GVAVAAFSKP VGVQKEQTPG  660
NRASPLVTTT FPPNKTFPTK SVITTSKVVA AKVETPPSLM PKKNQVVGSC TDKSLLDKPP  720
EKESSATASP LVVAAAESKS KDEASNRESQ DVATVTGTRQ KEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.30057s0099.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511098.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLQ8GZ960.0Q8GZ96_ARATH; At1g58220
STRINGBostr.30057s0099.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein