PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2983s0029.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 746aa MW: 81653.1 Da PI: 5.6355 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL++ l+L+ qVk+WFqN+R+++k Bostr.2983s0029.1.p 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 216.7 | 8e-68 | 253 | 474 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++e+ ++a a++p+Wv+ e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + + Bostr.2983s0029.1.p 253 ELAVAAMEEFWRMAHAGDPLWVSTDnsiEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsR 341 57899******************99999**************999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q +++g+w++vdvS+ds ++ + ++ R +++pSg+li++++ng Bostr.2983s0029.1.p 342 ALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQhDSDGSWAVVDVSLDSLRPST---PILRTRRRPSGCLIQEMPNG 428 ****************************************************************976...7******************* PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtw+eh+++++r++h+++++lv+sgla+gak+wvatl+rqce+ Bostr.2983s0029.1.p 429 YSKVTWIEHMEVDDRSVHNMYKPLVHSGLAFGAKRWVATLERQCER 474 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-24 | 43 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-19 | 49 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.60E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.863 | 244 | 477 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.63E-35 | 246 | 476 | No hit | No description |
CDD | cd08875 | 1.94E-123 | 248 | 473 | No hit | No description |
SMART | SM00234 | 2.0E-75 | 253 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-56 | 254 | 474 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.8E-6 | 350 | 474 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.22E-25 | 494 | 733 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TDVTTENPSG EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN LEPLQVKFWF QNKRTQMKAQ 120 SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPSGSS FAPLAIHAPP RSLDLEVGNF GNQTGFVGEM YGTGDILRSV 240 SIPSETDKPI IVELAVAAME EFWRMAHAGD PLWVSTDNSI EILNEEEYFR TFPRGIGPKP 300 LGLRSEASRE SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL 360 QVMTAEFQVP SPLVPTRENY FVRYCKQHDS DGSWAVVDVS LDSLRPSTPI LRTRRRPSGC 420 LIQEMPNGYS KVTWIEHMEV DDRSVHNMYK PLVHSGLAFG AKRWVATLER QCERLASSMA 480 NNIPGDLSAV ITSPEGRKSM LKLAERMVMS FCSGVGASTA HAWTTMSTTG SDDVRVMTRK 540 SMDDPGRPPG IVLSAATSFW IPVAPKRVFD FLRDENSRKE WDILSNGGMV QEMAHIANGH 600 EPGNCVSLLR VNSGNSSQSN MLILQESCTD ASGSYVIYAP VDIVAMNVVL SGGDPDYVAL 660 LPSGFAILPD GSVGGGDGNP QEVVSSTSSG SCGGSLLTVA FQILVDSVPT AKLSLGSVAT 720 VNSLIKCTVE RIKAAVACDG GGGGA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2983s0029.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF424560 | 0.0 | AF424560.1 Arabidopsis thaliana AT4g04890/T1J1_3 mRNA, complete cds. | |||
GenBank | AY062575 | 0.0 | AY062575.1 Arabidopsis thaliana Unknown protein (At4g04890; T1J1.3) mRNA, complete cds. | |||
GenBank | BT000144 | 0.0 | BT000144.1 Arabidopsis thaliana Unknown protein (At4g04890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455798.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X1 | ||||
Refseq | XP_010455799.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X1 | ||||
Refseq | XP_010455800.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X2 | ||||
Refseq | XP_010455802.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 isoform X3 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A178V5B8 | 0.0 | A0A178V5B8_ARATH; PDF2 | ||||
STRING | Bostr.2983s0029.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2983s0029.1.p |
Publications ? help Back to Top | |||
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