PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0262.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 281aa    MW: 31907.2 Da    PI: 5.9269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0262.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.3e-10311121298
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           ++++ ++p +f+ +  g    +  +++  ++ +sW++ l  ++ ++   ++++ W eFv++n+L  +D + F++d+++     v++++
  Bostr.29827s0262.1.p  31 SKSMRIIPDEFVGSTPGA--FEHRVVISVRWENSWQLWL--ERDKDDlLMIKEDWDEFVDDNHLGPNDNLFFRHDDTMFL--EVHIYK 112
                           3355699*****888555..334699999**********..88887779************************8775544..666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1613114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1415115IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1117112No hitNo description
SMARTSM010193.8E-1419114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.57420114IPR003340B3 DNA binding domain
PfamPF023624.5E-831113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14175264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-11176271IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-11182278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MLPKGVIDKI QANVSKPFFW KSLSPGKNWK SKSMRIIPDE FVGSTPGAFE HRVVISVRWE  60
NSWQLWLERD KDDLLMIKED WDEFVDDNHL GPNDNLFFRH DDTMFLEVHI YKNNGDEIMD  120
VPLEVEPETE PLHQNSHKET TTASASASEF SANGGTNGRA KEGCADVKNP EQYLLNPENP  180
YFVKTLTKKN DVLYVPKPVI QKYGLKFGPP NSTMNYLLPE DKMDGFTKIY GGGRTLCFNG  240
WVGLCRKYNL KVGDSVVCEL ERSGGLVSAV RVHFVNENMR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0262.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454875.11e-179PREDICTED: B3 domain-containing protein At5g25470-like
RefseqXP_010454876.11e-179PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-143Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLD7M3Z51e-157D7M3Z5_ARALL; Predicted protein
STRINGBostr.29827s0262.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-138B3 family protein