PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0240.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CPP
Protein Properties Length: 475aa    MW: 52750 Da    PI: 8.2953
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.72.7e-1498136241
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           ++++CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  Bostr.29827s0240.1.p  98 QQRHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 136
                           789*************************.********976 PP
2TCR512.9e-16182221140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeC++a+  Cse+CkC+dCkN e
  Bostr.29827s0240.1.p 182 KHSKGCHCKKSGCLKKYCECYQANILCSENCKCQDCKNFE 221
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.1E-1697137IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.6998222IPR005172CRC domain
PfamPF036384.1E-11100134IPR005172CRC domain
SMARTSM011142.8E-19182223IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12185220IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEDLSSNQNL LPRQFDFSVS SKMDSFQKSL ELPPCSPVKS SQESATEVTP PQKPPLHRFG  60
HSQVQKNQSG KCRVSKHDPL TSRVQTEVES KDNTPNKQQR HCNCKNSKCL KLYCECFASG  120
SYCNGCNCLN CHNNLENEGS RQEAITVILE RNPNAFKPKI AGSPHGMKDL QENVRQILLL  180
GKHSKGCHCK KSGCLKKYCE CYQANILCSE NCKCQDCKNF EGSEERNALL HGPQVSETYI  240
QQTTNAAVNR AIDMFGYLNP PESRKRKSKD ASHSVAVRGS SAVSSHVVKN QRANRDIRNG  300
ETSLFSLPNN KAASGSTTCA YRSSLSKTIQ SHHVRELCSL LVSKSVDVAN KLSGTKCETD  360
KGRKYDKDPS LDQAQRDANE INDSPDCVLD ANRMDEKPLS PATRALMCDE EHEIGSEKET  420
LARVKTNQEK EDTDTSSGIY LEQERQILSS FRDYLIQLSN RGSVNGKNIK ANTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-33942316132Protein lin-54 homolog
5fd3_B4e-33942316132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054051e-129AC005405.1 BAC F18A17 from chromosome V containing TINY at 60.5 cM, complete sequence.
GenBankCP0026881e-129CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287605.20.0protein tesmin/TSO1-like CXC 7
SwissprotF4JY840.0TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLR0HA940.0R0HA94_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.29827s0240.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein