PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.29827s0236.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GATA | ||||||||
Protein Properties | Length: 332aa MW: 36484.4 Da PI: 5.3715 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 9.2e-18 | 221 | 255 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Bostr.29827s0236.1.p 221 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 255 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 8.8E-79 | 1 | 309 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.635 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.7E-18 | 215 | 265 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-16 | 217 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 219 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.54E-15 | 220 | 267 | No hit | No description |
Pfam | PF00320 | 1.2E-15 | 221 | 255 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 221 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEDEAHECFH TADHFAVDDL LVDFSNDDDE EKDVVADSTT TTTLTDSSNV SAVDLPNFSG 60 DVQDGTSFSG DLCVPCDDLA DELEWLSNIV DESFSPEDVQ KLQLISGFKI RPDPKSESGS 120 SGNPNTSSPI FTTDVSVPAK ARSKRSRAAA CNWASRGLLI ETVYDNPFTG ETILSSHNLS 180 PPTSPPPPMA QLGKKQAIDG GYRRKKDVFS PESGGAEERR CLHCATDKTP QWRTGPMGPK 240 TLCNACGVRY KSGRLVPEYR PAASPTFMLT KHSNSHRKVM ELRRQKEMSR AHHEFVHHHH 300 GTDTAMIFDV SSEGDDYLIH HKVGPDLRQL I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.29827s0236.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493758 | 0.0 | AB493758.1 Arabidopsis thaliana At5g25830 mRNA for hypothetical protein, partial cds, clone: RAAt5g25830. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020877868.1 | 0.0 | GATA transcription factor 12 | ||||
Swissprot | P69781 | 0.0 | GAT12_ARATH; GATA transcription factor 12 | ||||
TrEMBL | A0A178UTT9 | 0.0 | A0A178UTT9_ARATH; GATA transcription factor | ||||
STRING | Bostr.29827s0236.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6625 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 1e-159 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.29827s0236.1.p |
Publications ? help Back to Top | |||
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