PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29827s0012.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 606aa    MW: 69418.3 Da    PI: 8.076
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29827s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-1696164275
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                           W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++++++++ +
  Bostr.29827s0012.1.p  96 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNANDHHNSN 164
                           ********************998.....9********************************9999988884332 PP
2trihelix101.47.1e-32446541186
              trihelix   1 rWtkqevlaLiearr..........emeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                           rW+k+evlaLi++rr          +++++l++ ++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+t
  Bostr.29827s0012.1.p 446 RWPKDEVLALINIRRsissmndddhKDGSSLSSpSSKAVPLWERISKKMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRT 533
                           8**************77776665443333333235699*******************************************8.9***** PP

              trihelix  79 cpyfdqle 86 
                           cpyf+ql+
  Bostr.29827s0012.1.p 534 CPYFHQLT 541
                           ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-1194161No hitNo description
PROSITE profilePS500905.48295147IPR017877Myb-like domain
PfamPF138379.8E-20445542No hitNo description
CDDcd122038.95E-25445521No hitNo description
PROSITE profilePS500906.934446514IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MFDSGVPEQI HRFIASPQPA SPLPPHQPAA ERSLPFPVSF ASFNTNHQAQ HILSLDSRKI  60
IHHHHHHHHD IKDGSATAEW IGRTDHDGDN HHHHPWCSDE VLALLRFRST VENWFPEFTW  120
EHTSRKLAEV GFKRSPQECK EKFEEEERRY FNSNNNANDH HNSNYNNKGN NYRIFSEVEE  180
FYHHGHDDEH VSSEIGDSQN KRINSIERKG NVEETGQDLM EEEKLRDQGQ GQVEEASMGN  240
KINSIDVGKV GNVEDDAKSS SSSSLMMVVR EKKKRKRKKE KERFGVLKRF CEGLVRKMIA  300
QQEEMHKKLL DDMVKEEEEK IAREKDWKKQ EMERLNKEVE IRKQEQAMAS DRSTNIIKFI  360
SKFTDHDLDV QSPRNPFQDS SSLALPQTKG RKQFQTSSSL LLQTLTPHNL LTSDKSLGPI  420
STKTLKTKTQ NPKPPKSDDK SDLGKRWPKD EVLALINIRR SISSMNDDDH KDGSSLSSPS  480
SKAVPLWERI SKKMLELGYK RSAKRCKEKW ENINKYFRKT KDVNKKRPLD SRTCPYFHQL  540
TALYSQPSTG TTTIATATSA GDLETRPEQN RVGSGDPNIS APMHVDADGA GDKSNVQFSG  600
FDLEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277KKRKRK
2272278KKRKRKK
3273281KRKRKKEKE
4274278RKRKK
5274279RKRKKE
6274280RKRKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29827s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2272850.0AK227285.1 Arabidopsis thaliana mRNA for GTL1 - like protein, complete cds, clone: RAFL11-11-K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084000.10.0PREDICTED: trihelix transcription factor GTL2-like isoform X1
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A178UB250.0A0A178UB25_ARATH; GT2L
STRINGBostr.29827s0012.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]