PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.29505s0041.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB_related

Protein Properties

Length: 316aa MW: 35230.1 Da PI: 5.87

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29505s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	4e-17	26	70	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT Ed+ll +v+q+G g+W+ + ++ g++R++k+c++rw+ Bostr.29505s0041.1.p 26 KGPWTDVEDKLLTAYVNQHGHGNWNDVEKHSGLTRSGKSCRHRWL 70 79******************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.675	21	90	IPR017930	Myb domain
SMART	SM00717	3.4E-12	25	88	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-15	25	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-15	26	87	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-15	26	70	IPR001005	SANT/Myb domain
CDD	cd00167	3.84E-11	28	69	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-5	70	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MKLMMGKVCH YSGSSNDIAM KKLFTKGPWT DVEDKLLTAY VNQHGHGNWN DVEKHSGLTR 60 SGKSCRHRWL PGRTDNDIKN FWHTRLKRLQ RHGLPVYPGE VQEQAMNATS KSGLNTYLLD 120 AHRSQNSLDA DNVEKPYLPL NQCSSYYDSM FANVPTTGCF PFSVGYAMEE QNPALWNNPF 180 VESSPEQVAD NHLLGNATYS SLHGPLIHGI ENLELPSFQC FNSHEEPNSF GAQQSNQMSA 240 LMSENTLVLS PLTEQTPSDF PSSLYDLESP LFSLLGHTEL TPTSVNTTDL GCFGSTPSNE 300 RRTSYDDDVI KTTSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29505s0041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880852.2	1e-113	transcription factor MYB104
Swissprot	Q9SM27	1e-90	MY104_ARATH; Transcription factor MYB104
TrEMBL	D7LFF1	1e-105	D7LFF1_ARALL; Predicted protein
STRING	Bostr.29505s0041.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9198	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26960.1	1e-100	myb domain protein 81

Link Out ? help Back to Top
Phytozome	Bostr.29505s0041.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145]