PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29505s0025.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 374aa    MW: 42319.1 Da    PI: 6.3457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29505s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-17754148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          + rWT eEd+ll+ +vk++G +tW+ + +  g+ R++k+c+ rw ++l
  Bostr.29505s0025.1.p  7 KCRWTNEEDKLLKAYVKKHGDRTWSDVQKQSGLSRCAKSCRFRWMNHL 54
                          569*******************************************97 PP
2Myb_DNA-binding48.52e-1561102245
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           g++T+ E+++++++++ lG++ W+ Iar++  gRt++++k++w+
  Bostr.29505s0025.1.p  61 GAFTEKEEQRIIELHAILGNK-WAQIARELH-GRTDNEIKNFWN 102
                           89*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.826258IPR017930Myb domain
SuperFamilySSF466895.99E-276101IPR009057Homeodomain-like
SMARTSM007173.5E-13656IPR001005SANT/Myb domain
PfamPF002492.8E-14754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-22961IPR009057Homeodomain-like
CDDcd001672.91E-11954No hitNo description
SMARTSM007175.0E-1259107IPR001005SANT/Myb domain
PROSITE profilePS5129417.98959109IPR017930Myb domain
PfamPF002491.1E-1360102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2262107IPR009057Homeodomain-like
CDDcd001672.12E-1062102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKKTFTKCRW TNEEDKLLKA YVKKHGDRTW SDVQKQSGLS RCAKSCRFRW MNHLRPELKT  60
GAFTEKEEQR IIELHAILGN KWAQIARELH GRTDNEIKNF WNHAMNASAS QSGLNIDLLD  120
GHHSQDSLKA DNVEIPQVES KHLPLNQYSP YYQSMLANVP TTVGFMRQRP SVVQPDRYNL  180
ITSPHMPSLK RFREPETTGG YAMNKQNPTL SNYPFVESTQ EQLPDSHFLG NATYSSPPGP  240
LIHGLEKLEL PSFQGFNTHE ELSSCGAEQY NPMPNLEPHN TLVQSPLIDQ TPLYDGMLES  300
IVYGSLGERP NSDTSSESPL FQSSLLSHTE VTPASANTID LDYLGSTSSN ERHTSNDGDW  360
IRQFFGEDTY NTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2551055104B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29505s0025.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051681e-79AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankAC0056231e-79AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankATU269341e-79U26934.1 Arabidopsis thaliana DNA-binding protein (MYB104) gene, complete cds.
GenBankCP0026851e-79CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880852.21e-165transcription factor MYB104
SwissprotQ9SM271e-143MY104_ARATH; Transcription factor MYB104
TrEMBLD7LFF11e-150D7LFF1_ARALL; Predicted protein
STRINGBostr.29505s0025.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-146myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]