PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.29344s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 641aa MW: 71536.1 Da PI: 9.7185 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 53 | 105 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 + W t+E++ l +avk++ +W+++a++++ + ++ +c++++q+++ Bostr.29344s0017.1.p 53 QVWGTWEELVLTCAVKRHAFTDWDSVAKEVQarsrssLIASAVNCRLKYQDLK 105 68*****************************999999999999******9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.59E-5 | 48 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.5E-8 | 53 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-4 | 55 | 105 | No hit | No description |
SMART | SM00297 | 6.2E-21 | 289 | 398 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 9.68E-18 | 291 | 396 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 2.0E-17 | 295 | 422 | IPR001487 | Bromodomain |
CDD | cd04369 | 4.93E-15 | 296 | 393 | No hit | No description |
Pfam | PF00439 | 4.2E-11 | 305 | 383 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 13.327 | 308 | 379 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MKEEEEEQEE EETVISNGMN DEDDTNNINS YSEFDNNRIG DGDDNCNLNQ ISQVWGTWEE 60 LVLTCAVKRH AFTDWDSVAK EVQARSRSSL IASAVNCRLK YQDLKRRFQD SVDGGEGNSE 120 AAGAAEDEVG EIPWLEQLRS LHVAELRREV QRCDDSILSL QLKVKKLEEE KNGDDGDNKP 180 DLGNRNDETK PAKLNRETTE SDRDDNRSMN ESNSTASVDK IADHDRDKMV LAYPDPDPVY 240 KAAAAEDEER TVSKRSEMSN SGELDESGTS TGPGKRKGQK YRSGGGGGDI KSAGYKSQPL 300 IDIIKLVRSH PRGSVFESRL RSQETKDYKR LIRQHLDIKT IEKKMEKGSY VSSSLSFYRD 360 LKLLFTNAIV FFPPSSSESM AAQELRSLVS NEINKRTGNL GHGIIKAEAG SSVSRQKSSV 420 LPLVACKKNS SSSKKTSPSS SFKQKDEKKS QEVSEEKTVT TFASARSSRR TNKVIAVVAK 480 DTKMGRAKNN NKKQKDMKTD SSSDDDDDEK EETPKTEKKT VAIPSDKKKS VADFLKRIKK 540 NSPQKGKETT SKNQKKSDGN IKKENDYQKK SDGNVKKENS IAKPRELRSN STGKKKAEVE 600 NNNSKSSSKR KQPKETAEAT GKRGRESGKD SKQPKKRSRR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.29344s0017.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY056393 | 0.0 | AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds. | |||
GenBank | BT000519 | 0.0 | BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002876536.1 | 0.0 | uncharacterized protein LOC9314386 | ||||
TrEMBL | D7LWL1 | 0.0 | D7LWL1_ARALL; Uncharacterized protein | ||||
STRING | Bostr.29344s0017.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4123 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60110.1 | 0.0 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.29344s0017.1.p |