PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.29223s0038.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 842aa MW: 93877.4 Da PI: 6.1892

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.29223s0038.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.7e-29	554	604	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Bostr.29223s0038.1.p 554 EKTISIEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 604 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	539	624	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-26	556	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.98E-21	733	823	No hit	No description
PROSITE profile	PS51745	19.707	741	823	IPR000270	PB1 domain
SMART	SM00666	1.4E-22	741	823	IPR000270	PB1 domain
Pfam	PF00564	4.6E-18	742	822	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.1E-26	742	823	No hit	No description
CDD	cd06407	2.98E-34	742	822	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVA GELYSAVGAP 60 TRFTDYSVLL ASSESETTTK ENNHVPSPLW GIMPLENPDS YCAIKAKMTQ ALRYFKESTG 120 QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSI DGERDGDLGL 180 PGRVFRKKLP EWTPNVQYYS SKEFSRLDHA LHYNVQGTLA LPVFEPSRQL CVGVVELIMT 240 SPKINYAPEV EKVCNALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI LTVVCETYKL 300 PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA HVWGFRDACA 360 EHHLQKGQGV AGRAFLSGNL CFCRDVTRFC KTDYPLVHYA RMFKLTSCFA VCLKSTYTGD 420 DEYVLEFFLP PAITDKSEQD CLLGSLFQTM KQHYSSLKVV SETEFCENEI SLEVVEASED 480 RMVYSKLEPI RIHHPAPISK DYLELNAPEQ KLSLNSDLME NNEVADGFER FQTLEPLPEA 540 KTVKKSERKR GKTEKTISIE VLQQYFSGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 600 INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWSHQIS PIENQPPKNC PPASGSPPSY 660 LQDVKIENRD AEDSAGSSTS RASCKVSPIC ETRFRLPTHN QETLRQTALD DSDSSSKNIA 720 NLWTHLSCQD TASPTTLHNK LVSIKATYRE DIIRFKISPE SVSIMELKQQ VAKRLKLEMA 780 AFELKYLDDD SEWVSVSCDA DLSECLDTSA AKANTLRLSV HDVTLNFGSS CESSEENMMC 840 L*

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSEAAGDVA GELYSAVGAP  60
TRFTDYSVLL ASSESETTTK ENNHVPSPLW GIMPLENPDS YCAIKAKMTQ ALRYFKESTG  120
QQHVLAQVWA PVKNRGRYVL TTSGQPFVLG PNSNGLNQYR MVSLTYMFSI DGERDGDLGL  180
PGRVFRKKLP EWTPNVQYYS SKEFSRLDHA LHYNVQGTLA LPVFEPSRQL CVGVVELIMT  240
SPKINYAPEV EKVCNALEAV NLKTSEILNH ETTQICNEGR QNALAEILEI LTVVCETYKL  300
PLAQTWVPCR HRSVLAFGGG FKKSCSSFDG SCMGKVCMST SDLAVYVVDA HVWGFRDACA  360
EHHLQKGQGV AGRAFLSGNL CFCRDVTRFC KTDYPLVHYA RMFKLTSCFA VCLKSTYTGD  420
DEYVLEFFLP PAITDKSEQD CLLGSLFQTM KQHYSSLKVV SETEFCENEI SLEVVEASED  480
RMVYSKLEPI RIHHPAPISK DYLELNAPEQ KLSLNSDLME NNEVADGFER FQTLEPLPEA  540
KTVKKSERKR GKTEKTISIE VLQQYFSGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK  600
INKVNRSLTR LKHVIDSVQG ADGSLNLTSL SPRPWSHQIS PIENQPPKNC PPASGSPPSY  660
LQDVKIENRD AEDSAGSSTS RASCKVSPIC ETRFRLPTHN QETLRQTALD DSDSSSKNIA  720
NLWTHLSCQD TASPTTLHNK LVSIKATYRE DIIRFKISPE SVSIMELKQQ VAKRLKLEMA  780
AFELKYLDDD SEWVSVSCDA DLSECLDTSA AKANTLRLSV HDVTLNFGSS CESSEENMMC  840
L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.29223s0038.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300704.2	0.0	protein NLP6 isoform X1
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	R0GCV5	0.0	R0GCV5_9BRAS; Uncharacterized protein
STRING	Bostr.29223s0038.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.29223s0038.1.p

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]