PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.29223s0015.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 353aa    MW: 38084 Da    PI: 8.2208
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.29223s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-3943104263
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                           k++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rknk+sss
  Bostr.29223s0015.1.p  43 KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPVGGGIRKNKRSSS 104
                           7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-303595IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3344101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.71447101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDTAKWPQEF VVKPMNEIVT NTSLKQPNPP PPNPVERKAR PEKDQALNCP RCNSLNTKFC  60
YYNNYSLTQP RYFCKDCRRY WTEGGSLRNI PVGGGIRKNK RSSSSNSNSS SPSSSSSSKK  120
PLFANNNTPA PLPQLNPKIS ESAAAAAKVQ DLTFSQGFGN AHEVKDLNLA FSQRFGIGHH  180
HNIPEFRQVV PSSMKNNPLV STSSALELLG ISNSSASSDS RPAFMSFPNV HDSSVYTASG  240
FGLSYPQFQE FMRPALGFSL DGGYGGDTLR QEEGSSGTTT STNNGRPLLP FESLKLPVSS  300
PSTNSGGIVK ENDHHSDHEH EKEEAEADQS VGFWNGMLSA GASAASGGGS WQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.29223s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848980.0AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430605.11e-180PREDICTED: dof zinc finger protein DOF1.8 isoform X1
SwissprotQ84JQ81e-175DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A178W2N81e-175A0A178W2N8_ARATH; Uncharacterized protein
STRINGBostr.29223s0015.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-147Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]