PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0320.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family CO-like
Protein Properties Length: 362aa    MW: 40164.7 Da    PI: 6.6885
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box186e-061052440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         + C+++ +   + +C+ ++ +lC +C  + H        H++v
  Bostr.2902s0320.1.p 10 QACDTCRSAACTVYCRADSAYLCTSCDAQVHAVnrlpsrHERV 52
                         57******99*******************99335577777765 PP
2zf-B_box36.31.1e-115297342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          r+C+ +e+ ++ +fC+ +   lC  C +e+H+       H++vp+
  Bostr.2902s0320.1.p 52 VRVCQSCERAPAAFFCKADAASLCTACDSEIHSAnplarrHQRVPI 97
                         689*****************************66899999**9997 PP
3CCT652.1e-22292336145
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                          Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  Bostr.2902s0320.1.p 292 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKRKE 336
                          9*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893754IPR000315B-box-type zinc finger
SMARTSM003366.0E-8754IPR000315B-box-type zinc finger
CDDcd000211.73E-71254No hitNo description
PROSITE profilePS5011912.2875097IPR000315B-box-type zinc finger
PfamPF006433.2E-95297IPR000315B-box-type zinc finger
CDDcd000212.38E-95397No hitNo description
SMARTSM003362.7E-125597IPR000315B-box-type zinc finger
PROSITE profilePS5101716.559292334IPR010402CCT domain
PfamPF062032.0E-16292334IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLKEESKWAQ ACDTCRSAAC TVYCRADSAY LCTSCDAQVH AVNRLPSRHE RVRVCQSCER  60
APAAFFCKAD AASLCTACDS EIHSANPLAR RHQRVPILPI SGNSYSSMET NHSCETTMAD  120
PENSLVVGQE EEDEDEAEAA SWLLPNLGKN SGNNNSQNNG FSIGDEYLDL VDYSSSMDKQ  180
FTDQSKQYQQ HCNVPERSYG GDGIVPLQIE ESKGHMHHEK QNFQLGFTYG SSGAHRSSNG  240
SISHMVHVSS TDLGVVPEST TSDATVSHPR SPKAVTEQLP EPPTQMLSPM DREARVLRYR  300
EKKKMRKFEK TIRYASRKAY AEKRPRIKGR FAKRKEVDAE ADQAFSTTIM FDTGYGIVPS  360
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299305REKKKMR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0320.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0743690.0AY074369.1 Arabidopsis thaliana putative CONSTANS 1 protein (At5g15850) mRNA, complete cds.
GenBankBT0023630.0BT002363.1 Arabidopsis thaliana clone U10630 putative CONSTANS 1 protein (At5g15850) mRNA, complete cds.
GenBankY105550.0Y10555.1 A.thaliana mRNA for CONSTANS like 1 (COL1) protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288045.10.0zinc finger protein CONSTANS-LIKE 1
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLR0HBC40.0R0HBC4_9BRAS; Uncharacterized protein
STRINGBostr.2902s0320.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.10.0CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]