PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2902s0256.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 264aa    MW: 28525.1 Da    PI: 8.507
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2902s0256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.91e-3254110459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          ++YkeClkNhAa +Ggha+DGCgEfmps++ + +++++++CaACgCHRnFHRre++ 
  Bostr.2902s0256.1.p  54 TTYKECLKNHAAGIGGHALDGCGEFMPSPSFNsNDPTSITCAACGCHRNFHRREEDP 110
                          68****************************99899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2947107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-2754108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-3155107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17256107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.89E-19165237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28168236IPR009057Homeodomain-like
TIGRFAMsTIGR015655.6E-25179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDVIATTTTI VSDLDSRQPE IEAPTRIQPA KPISFSNGKR CHHHHLASEA VAVTTYKECL  60
KNHAAGIGGH ALDGCGEFMP SPSFNSNDPT SITCAACGCH RNFHRREEDP SSASAVVPAI  120
EFRPHNRHQL PPPPPPHPVG IRSPDDDDSA SPPPISSSYM LLALSGGGGG ANMAAPMSRK  180
RFRTKFSQYQ KEKMSEFAER VGWRMPKADD VVVKEFCREI GVDKSVFKVW MHNNKISGRG  240
GARRPNGGGD SRESVVPTNA SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221782381676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2902s0256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankBT0121950.0BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197025.11e-164homeobox protein 30
SwissprotQ9LXG01e-165ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A178UMR31e-163A0A178UMR3_ARATH; ZHD8
STRINGBostr.2902s0256.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-138homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]