PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2902s0186.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 40636.7 Da PI: 6.059 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.6 | 1.2e-32 | 58 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptdee++ e+L++k+ + + + v ++v+i++++P++Lp v+++ ++++fF k++++y++g+rk+r Bostr.2902s0186.1.p 58 LPKGVKFEPTDEEVI-EHLEAKCGIDGlkphlfI---QdficsVTQDVGINYTHPQNLP-GVNKDGTSVFFFNKTAHAYQNGQRKRRRit 142 799************.99****877765455552...04445478999***********.6778899********************646 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +s +W++tg++k+v+ +g ++g+kk++v+yk + k+ek++Wv+h+y+l Bostr.2902s0186.1.p 143 ptsltDESVRWHKTGQTKPVMI-NGVQKGCKKIMVLYKSarKGLKPEKSNWVLHQYHL 199 6655333888************.999***********6422556778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-37 | 43 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.183 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-13 | 59 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MKTVHRAWIV DGPWIARNVK NASVSSALQI KDCGAYINCP NCSYRVDNSN VLYPWPGLPK 60 GVKFEPTDEE VIEHLEAKCG IDGLKPHLFI QDFICSVTQD VGINYTHPQN LPGVNKDGTS 120 VFFFNKTAHA YQNGQRKRRR ITPTSLTDES VRWHKTGQTK PVMINGVQKG CKKIMVLYKS 180 ARKGLKPEKS NWVLHQYHLG TDEGEIGEFV VSKITYQQQK QCEKAIDESE SFGVRGDPCT 240 PKTTTPTQAR PVISVDEDEI AYDNTKMALD SFAEGLENIQ EASFGSTSDK RAQVAENFSV 300 IEDNLVSKKI EASSSLVEKN PNHGNFDIGS GNFSVSDLEN AELGTLPDLL SFASEDSLLN 360 WLGWF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 139 | RKRRR |
2 | 136 | 140 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2902s0186.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163792 | 1e-167 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). | |||
GenBank | AL163817 | 1e-167 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 1e-167 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001330343.1 | 0.0 | NAC domain containing protein 85 | ||||
Swissprot | Q6NQK2 | 7e-74 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1P8BAI4 | 0.0 | A0A1P8BAI4_ARATH; NAC domain containing protein 85 | ||||
STRING | Bostr.2902s0186.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 0.0 | NAC domain containing protein 85 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2902s0186.1.p |