PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2902s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 30116.9 Da PI: 5.4072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 5.1e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl Bostr.2902s0170.1.p 14 RGPWTIEEDHRLMNFILNNGIHCWRIVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T E++++ +++ qlG++ W++Ia+++ gRt++++k++w++ Bostr.2902s0170.1.p 67 RGGFTDAEEDRIMELHSQLGNR-WSKIASHFS-GRTDNEIKNHWNT 110 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.605 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-5 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-11 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.18E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.127 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRKPCCDKI GLKRGPWTIE EDHRLMNFIL NNGIHCWRIV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TDAEEDRIME LHSQLGNRWS KIASHFSGRT DNEIKNHWNT KIKKKMKHLG 120 LDPATHEPIN NISDQTEANQ NTKPNMCPSI KEAEEINDQT PKDDVITETT KTLIISDNEE 180 ELLAKNCKTL CENEVDNGSL FVTQGNEISS SSFSSLHSSF SRSESSSYIA EDSISLEQWD 240 LDMTDPFVPW DLFANLDDNL FFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2902s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519622 | 0.0 | AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196938.2 | 1e-161 | myb domain protein 40 | ||||
TrEMBL | A0A178UPE5 | 1e-160 | A0A178UPE5_ARATH; MYB40 | ||||
TrEMBL | F4K6R6 | 1e-160 | F4K6R6_ARATH; Myb domain protein 40 | ||||
TrEMBL | Q9LY95 | 1e-160 | Q9LY95_ARATH; MYB transcription factor | ||||
STRING | Bostr.2902s0170.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 1e-143 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2902s0170.1.p |