PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.2902s0003.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

SRS

Protein Properties

Length: 314aa MW: 32829.1 Da PI: 8.3331

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.2902s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211	2.9e-65	100	265	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalss 88 +sgta+CqdCGnqakk+C+++RCRtCCksrgfdC+thvkstWv+aa+rrerq + + a+ +a +s + + +k++r ++++q+a+s+ Bostr.2902s0003.1.p 100 ASGTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPSGANPTAGSSLsTCSGTKKPRIVgsQQQQQQATSH 189 57999**********************************************9999998888877577888999988545555556666 PP DUF702 89 tklssaeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 t++s++ +++++etss +P +++++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqGle Bostr.2902s0003.1.p 190 TSTSNT-PPQSFETSSsrqdgggskeaWPGQIRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEP 265 665554.67788888789******************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-58	103	264	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-30	215	263	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGMVGLRDVF LVAPAYHHHQ NAGVISGPEA AAAADLGVGV IPLLTAGPPQ HNVEDTDINF 60 LGNNRRWQNN NHETQYLHFK STNQTTIGTS SNNSGSGSGA SGTATCQDCG NQAKKECKQR 120 RCRTCCKSRG FDCSTHVKST WVSAARRRER QVMPSGANPT AGSSLSTCSG TKKPRIVGSQ 180 QQQQQATSHT STSNTPPQSF ETSSSRQDGG GSKEAWPGQI RAAAVFKCVR VTAVEDGDDE 240 YAYQAVVKIG GHVFKGFLYD QGLEPKEGFP NMSDLHLGGG ANNHNGVSAS APILDPPNVY 300 GGGGGGSGGG FYG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.2902s0003.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT020614	0.0	BT020614.1 Arabidopsis thaliana At5g12330 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637004.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-169	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	R0HF13	0.0	R0HF13_9BRAS; Uncharacterized protein
STRING	Bostr.2902s0003.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-143	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Bostr.2902s0003.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]