PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.28625s0055.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 387aa    MW: 41338 Da    PI: 8.6011
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.28625s0055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13132176347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Bostr.28625s0055.1.p 132 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 176
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.799125181IPR017930Myb domain
SuperFamilySSF466891.42E-16127179IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-18128179IPR006447Myb domain, plants
SMARTSM007171.7E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-11131175IPR009057Homeodomain-like
PfamPF002494.8E-11132176IPR001005SANT/Myb domain
CDDcd001673.32E-9132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGTCGGGG GGGGSCSSSA VKLFGVRLTD GSIIKKSASV  60
GNLSALAVVA AAATHHRLSP SSPLATSNHN DSPLPDHARY SNLHHNEGYL SDDPAHGSGS  120
SHRRGERKRG VPWTEEEHRL FLVGLQKLGK GDWRGISRNY VTSRTPTQVA SHAQKYFIRH  180
MSSSRRKRRS SLFDMVTDEM VTDSSPTQED QTVNRSSPSK EPENKSYLPS LELSLNNTME  240
PEAVIATAPP QEKPEEAVEP SNGVSPMLVP GGFFPPCFPV TYTIWLPATS TSLHGTEHAL  300
EAETSSQQHQ VLKPKAGFAK ERVNMDELVG MSQLSIGMAT KHETETSPSP SPLSLKLEPS  360
RPSAFHSNGS VNGADLSKGN SAIQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.28625s0055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297882.10.0transcription factor MYBS3
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGBostr.28625s0055.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein