PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.28243s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 340aa MW: 37839.7 Da PI: 7.7517 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.8 | 2.4e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Bostr.28243s0001.1.p 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.7E-11 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.85E-12 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.23E-17 | 6 | 63 | No hit | No description |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.4E-13 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.9E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.5E-8 | 236 | 325 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 340 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RAEGDEIEIE 60 DHRAQRVMIK GMSLNKKIPK RKLYQENFTV KRANLEFNTG FKRKALDEEA SNRSSSGSVV 120 SNSESCAQSN AWDTTFPCKR RTCVGRPKAA SSVEKLTKDL YTILQEQQSS SLSGSSEEDL 180 LFENETPMLI GHGSVLMRDP HSGAREEESE ASSLLVESSK SSSVHSAKLG GKAIKQEQLK 240 RSKSQVLGRH SLLLCSIDLK DVFNFDEFIE KFTEEEQQKL MKLLPQVDSV DGPDSLRSMF 300 ESSQFKENFS LFQQLVADGV FETSSSGSKL EDIKTLAKLA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 75 | 82 | KKIPKRKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.28243s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT020259 | 0.0 | BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds. | |||
GenBank | BT020450 | 0.0 | BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481361.1 | 0.0 | PREDICTED: GATA transcription factor 27-like isoform X1 | ||||
Swissprot | Q5PP38 | 0.0 | GAT27_ARATH; GATA transcription factor 27 | ||||
TrEMBL | D7MPX3 | 0.0 | D7MPX3_ARALL; Zinc finger family protein | ||||
STRING | Bostr.28243s0001.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1606 | 27 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47140.1 | 0.0 | GATA transcription factor 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.28243s0001.1.p |