PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0196.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 432aa    MW: 49646.5 Da    PI: 4.6213
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0196.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07274315144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           r rW++++ el++++++++G++  + +   ++ +Rt++q k+++
  Bostr.27991s0196.1.p 274 RTRWSKQDTELFYEGIREFGSN-LSMVQLLFP-NRTREQMKLKF 315
                           78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.5E-23267350No hitNo description
SuperFamilySSF466898.22E-8268322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-4270316IPR009057Homeodomain-like
SMARTSM007174.6E-6273321IPR001005SANT/Myb domain
CDDcd001678.03E-4276316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDTLDIVQEE GTNSSYVQHT GKFQPKPRLL DTVVEEPELH YSVDDTGYFL MGTNESEFMV  60
NVESRNDFST YGDLQEKHNI PEVPREMVPE MEARNASGGW EHKEQVVSPC TNNTVTVGEE  120
NCLGNTVEEE RAGRECKIGN SKRTTARKRK NTREEPNKSS KKPEKKKFKH STYRQKRTLE  180
KELLETPDDE IRFLPIRDML RLVEYKEWME KKEAKGAVVP PTQESNRNAS ESQYYSQGFD  240
ADEFGVESSE NQETNVVKPD SPVNYQTYMN KTSRTRWSKQ DTELFYEGIR EFGSNLSMVQ  300
LLFPNRTREQ MKLKFKLEER RYPLKLNDAL SSRSKHHIHF HNVIKKLQQE GVAAKEAEEE  360
RAEEEAGAEA ETTDVPENEE LEKSEEMERA SDGETGVKES DGGDIGNGVR LDGENESDGD  420
DDFWNSYKSD M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0196.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234410.0BT023441.1 Arabidopsis thaliana At4g39160 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866831.10.0transcription factor TFIIIB component B'' homolog
RefseqXP_020874413.10.0transcription factor TFIIIB component B'' homolog
TrEMBLB2BXT10.0B2BXT1_9BRAS; Myb-transcription factor
STRINGBostr.27991s0196.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein