PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0168.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 646aa    MW: 74096 Da    PI: 5.5512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.72.3e-1072666422373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsP 89 
                           ++lL+ cA+a+s+gd++ a  lL ++++++sp gd+ qRla++f++AL+arl++s+  + ++  ++ +t +++ +++l+a++++   sP
  Bostr.27991s0168.1.p 266 RTLLTLCAQAISTGDKTTALDLLMQIRQQSSPLGDAGQRLAHHFANALEARLQGSTGPMIQTYyNAITTLKETATDTLKAYRVYLSSSP 354
                           6799**************************************************7666666654888888888**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           ++++ ++   ++Il+a + +  +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpf
  Bostr.27991s0168.1.p 355 FVTLMYFFSFRMILDASKDAPVLHIVDFGILYGFQWPMFIQYISGRKDVPRKLRITGIELPQRGfrPAERIEETGRRLAEYCKRFNVPF 443
                           **************************************************************99************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                           e+++++++++e++++e+L+++p+E+laVn  l+l++l de++s e+ +rd++Lkl+++++P+v++++  + + n++ F  rf ea+++y
  Bostr.27991s0168.1.p 444 EYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENcPRDALLKLIRNMKPDVFIHSIVNGSFNAPFFISRFKEAVYHY 532
                           *****999**************************************99***************************************** PP

                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                           salfd+++++lpr++eeri  Ere+ gre++nv+ace+a+r+er et+++W+ r+ +aGF++ p++ + ++  +  l+k    + + v+
  Bostr.27991s0168.1.p 533 SALFDMFDSTLPRDNEERIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFRQKPVKAELVELFREKLKKWRyHKDFVVD 621
                           ******************************************************************************9998999**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                           e+s++l++gWk+r+L++ S+W
  Bostr.27991s0168.1.p 622 ENSKWLLQGWKGRTLYASSCW 642
                           ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.142239622IPR005202Transcription factor GRAS
PfamPF035148.0E-105266642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MMDPNFSESV NGYDYYGEII LPNSSGDFDA NPSFLANPVE DQYTLLKYVS EILMEESNGD  60
YKQSMFYDSL ALRNTEEMLQ QVITDSQNQS FSPDSIITTS CSNAGDASGS IIESPYSVDP  120
RIGPAVDEIV VRSRFSVADS ASQFKKGVEE ASKFLPNSDQ WLINLETERP ERRDLVKAEM  180
GSEPLRVKRN HEREIIDFEE VRNSKQFATN VEDGKITEMF DKVLLLDSEC DPPTLLDGKI  240
QSIQSNKQGG KGKKEKKKKS QVVDFRTLLT LCAQAISTGD KTTALDLLMQ IRQQSSPLGD  300
AGQRLAHHFA NALEARLQGS TGPMIQTYYN AITTLKETAT DTLKAYRVYL SSSPFVTLMY  360
FFSFRMILDA SKDAPVLHIV DFGILYGFQW PMFIQYISGR KDVPRKLRIT GIELPQRGFR  420
PAERIEETGR RLAEYCKRFN VPFEYKAIAS QNWETIRIED LDIRPNEVLA VNAGLRLKNL  480
QDETGSEENC PRDALLKLIR NMKPDVFIHS IVNGSFNAPF FISRFKEAVY HYSALFDMFD  540
STLPRDNEER IRFEREFYGR EAMNVIACEE ADRVERPETY RQWQVRMVRA GFRQKPVKAE  600
LVELFREKLK KWRYHKDFVV DENSKWLLQG WKGRTLYASS CWVPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-422656425374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0168.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293832.10.0scarecrow-like protein 34 isoform X3
RefseqXP_006293833.10.0scarecrow-like protein 34 isoform X3
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLR0FVU80.0R0FVU8_9BRAS; Uncharacterized protein
STRINGBostr.27991s0168.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein