|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Bostr.27991s0167.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
Family |
GRAS |
Protein Properties |
Length: 715aa MW: 80193.7 Da PI: 6.7039 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.27991s0167.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 367.5 | 1.9e-112 | 338 | 711 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts s+ l+a++++ v+P
Bostr.27991s0167.1.p 338 LRTMLVSCAQAVSINDRRTADDLLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---ASDMLKAYQTYISVCP 423
5789**************************************************************9999...9*************** PP
GRAS 90 ilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
+ k++ + aN+ I++ ++++ +++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g +e + etg+rLak++++++v
Bostr.27991s0167.1.p 424 FKKIAIIFANHSIMRLASTAnaKTLHIIDFGISYGFQWPSLIHRLAWRRASSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNV 512
*************998877666999***************************************99*********************** PP
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
pfe+n+ +a+++e+++le+L++k gE +aVn+ ++ +llde+v+++s+rd+vLkl+++++P+v++ + ++n++ F++rf e l +
Bostr.27991s0167.1.p 513 PFEYNA-IAQKWETIKLEDLKLKDGEFVAVNSLFRFRNLLDETVAVNSPRDAVLKLIRKIKPDVFIPSILSGSYNAPFFVTRFREVLFH 600
******.7********************************************************************************* PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
ys+lfd+ +++l re+ r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll++ + +++ v
Bostr.27991s0167.1.p 601 YSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLLVESGYkTKEFDV 689
******************************************************************************99888999*** PP
GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
+++ ++l++gWk+r ++ S+W
Bostr.27991s0167.1.p 690 DQDCNWLLQGWKGRIVYGSSVW 711
********************** PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 715 aa
Download sequence Send
to blast |
MGSYSAGFPG SLDWFDFPGL GNGFYLHDQP LLDIGSVPPP PEPYSQQNLA SADADFSDPV 60 LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YPDDDSQSLI TTTRPAQLVS 120 SPGGSSYASS TTTTSSDSQW SFDCLENNRP SSWLQTPIPN NFVFQSISTK SSRSPQSVVG 180 GGNAVFGSSF SNDFVSNMFN GSELASQFKK GIEEASKFLP KSSQLVIDVE NYIPALGSKE 240 KDTSVPYRLT GKKSHWREDE HLAEERSKKQ SAVYVDEAEL TEMFDKVLIF GEAKEQPVCI 300 LHENFPKEPA KASSVSKSHK GEKPAASGNS YTKDTPDLRT MLVSCAQAVS INDRRTADDL 360 LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSASD MLKAYQTYIS 420 VCPFKKIAII FANHSIMRLA STANAKTLHI IDFGISYGFQ WPSLIHRLAW RRASSCKLRI 480 TGIELPQRGF RPAEGVIETG HRLAKYCQKF NVPFEYNAIA QKWETIKLED LKLKDGEFVA 540 VNSLFRFRNL LDETVAVNSP RDAVLKLIRK IKPDVFIPSI LSGSYNAPFF VTRFREVLFH 600 YSSLFDMCDT NLTREDPMRV MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG 660 FRQIPLEKEL VQKLKLLVES GYKTKEFDVD QDCNWLLQGW KGRIVYGSSV WVPL*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC005315 | 0.0 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. |
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |