PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0092.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 295aa    MW: 33198.2 Da    PI: 9.2463
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0092.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-20213247135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  Bostr.27991s0092.1.p 213 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRL 247
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.9E-19207257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.281207243IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-15212270No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15212244IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.31E-18212261No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003204.2E-18213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNNGSWLPEE DFKGLADNFF DNLIEHIDDF PLEDIETADD EGDWDAGFQN LVPPPLDVLT  60
SLSSEFTCKG QRVGVQKPVP FVKQSSSSDV SSTVDSPPPD VKVSKLFQSS SPVSVLENTN  120
GSVLSQNQNR IQRLAFLVKG IRSKRKRPTT LRFFQSFRSE MSQQFVPDES ESETYLSSEN  180
SAKKKRKKNK SRPAQLVSYS PELFNSDRTV QKCTHCETTK TPQWREGPSG PKTLCNACGV  240
RFRSGRLVPE YRPASSPTFI PTVHSNSHRK IIEMRRKDEG QFDTRKIRAM TSRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0092.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294728.11e-170putative GATA transcription factor 13
SwissprotQ9SKN61e-130GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLR0FY111e-169R0FY11_9BRAS; Uncharacterized protein
STRINGBostr.27991s0092.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-116GATA transcription factor 13