PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0078.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 656aa    MW: 71590.1 Da    PI: 5.0139
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0078.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-10123149127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC++f+r   C++G+ Ck+aHg+
  Bostr.27991s0078.2.p 123 WKTSLCSYFRREASCSHGSECKYAHGE 149
                           8************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-13117154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8119154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033122150IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4122149IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-8123149IPR000571Zinc finger, CCCH-type
CDDcd005907.27E-5214279No hitNo description
SuperFamilySSF549288.59E-7217284IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.7E-7217279IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168736.284302655IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533357.4E-37305330IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.4E-37362501IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.4E-37537654IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.1E-36547655IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138475.2E-8602652IPR025714Methyltransferase domain
CDDcd024407.78E-6604653No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MASSSIDELP STAAETLTSQ PPSTITPVPT EPLPRETSSI EINELPLATK TLTPPAPVEP  60
IPMETLSIED LPPALVEPIP SSDSNPTDNI EAVGEKRKRA DDENNEKTNL DSSDTKVIPS  120
PWWKTSLCSY FRREASCSHG SECKYAHGEQ ELRMKPDNTW DPTSERGKKA KAMKMSEQEE  180
KEDDEVLFTE QMMDSIDDDE GCGGSVVDLS LSKCLVHLPR KWQSDELKNF LGEQGVQYKF  240
AKKRRGMLVG FVTFENAKQL QSGVKILDGK TVNSKNLKIA DVLPRTFDKN ETKKSAKTAR  300
DAVTPLADLS YADQLEQKKA SIAQMLKKLA RSARKACPNG SSLPEWVLTS RDRGGLSCKL  360
EGIIESPITN GYRNKCEFSV GLSVQGKPTV GFSLGNFCAG VTAVEEPVNC PNVSKIALQY  420
ASIFQKVIEK SKLQVWNRFQ HSGFWRQFTV REGRKPGVFS NDEDAITRIA EVMLIVQVCL  480
TGSDEAEVAT EFEEMAKAFA EGARASSPTL PLTVLVVQNH TGISNVAPPD APLQVLPIPM  540
SDNGTNQEQI TNVLTEARIH DHINNLRFSI SPTAFFQVNT VTAEKLYSVA GDWADLGPDT  600
LLFDVCCGTG TIGLTLAHRV GMVIGIEMNA SAVADAERNA TINGISNCKF ICSKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5xj2_A8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5xj2_B8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5xj2_C8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5xj2_D8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5zq1_A8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5zq8_A8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
5zq8_B8e-1830065577361Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0078.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282890.0AY128289.1 Arabidopsis thaliana At2g28450/T1B3.3 mRNA, complete cds.
GenBankBT0022930.0BT002293.1 Arabidopsis thaliana At2g28450/T1B3.3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010414523.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like isoform X1
RefseqXP_010414524.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like isoform X2
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLR0HM810.0R0HM81_9BRAS; Uncharacterized protein
STRINGBostr.27991s0078.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]