PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27991s0037.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Dof

Protein Properties

Length: 321aa MW: 34320.8 Da PI: 9.9342

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27991s0037.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	76	133	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGg++r+nkk + Bostr.27991s0037.2.p 76 ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGSCRRNKKGK 133 789***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-36	58	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-32	76	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSTNSNNHPH HFQLQENGSL VSGHHQVLSH HFPQNPNPNP HHVDTAAAAT VDLGSVNGQA 60 AERARLAKNS QPLEGALKCP RCDSANTKFC YFNNYNLTQP RHFCKACRRY WTRGGALRNV 120 PVGGSCRRNK KGKSGNSKSS SSSSQNKQST SMVNATSPTT NSNVQLQTNS QFPFLPTLQN 180 LTQLGGIGLN LAAINGNNGG NGNTSSSFLN DLGFFHGGNT SGPVMGNNNN ENNIMTSLGS 240 ASNFALFDRT MGDYNFPNEG NMGLSTARVS QTAPVKMEEP HMGNISRPVL GLTSLGNQSN 300 QYWTGTGLPG SSSNHHQHLM *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27991s0037.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005727	0.0	AC005727.3 Arabidopsis thaliana chromosome 2 clone F8N16 map mi54, complete sequence.
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001189627.1	1e-180	Dof-type zinc finger DNA-binding family protein
Swissprot	Q9ZV33	1e-180	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	F4IJM6	1e-179	F4IJM6_ARATH; Dof-type zinc finger DNA-binding family protein
STRING	Bostr.27991s0037.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-154	Dof family protein

Link Out ? help Back to Top
Phytozome	Bostr.27991s0037.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]