PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27991s0037.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Dof

Protein Properties

Length: 337aa MW: 36123.8 Da PI: 9.7516

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27991s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.3	1.7e-38	92	149	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGg++r+nkk + Bostr.27991s0037.1.p 92 ALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGSCRRNKKGK 149 789***************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-36	74	144	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	92	147	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.413	93	147	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	95	131	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MVFSSSSFLD PPINWPQSTN SNNHPHHFQL QENGSLVSGH HQVLSHHFPQ NPNPNPHHVD 60 TAAAATVDLG SVNGQAAERA RLAKNSQPLE GALKCPRCDS ANTKFCYFNN YNLTQPRHFC 120 KACRRYWTRG GALRNVPVGG SCRRNKKGKS GNSKSSSSSS QNKQSTSMVN ATSPTTNSNV 180 QLQTNSQFPF LPTLQNLTQL GGIGLNLAAI NGNNGGNGNT SSSFLNDLGF FHGGNTSGPV 240 MGNNNNENNI MTSLGSASNF ALFDRTMGDY NFPNEGNMGL STARVSQTAP VKMEEPHMGN 300 ISRPVLGLTS LGNQSNQYWT GTGLPGSSSN HHQHLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27991s0037.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850126.1	0.0	Dof-type zinc finger DNA-binding family protein
Swissprot	Q9ZV33	0.0	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A178VZ40	0.0	A0A178VZ40_ARATH; Uncharacterized protein
STRING	Bostr.27991s0037.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	1e-165	Dof family protein

Link Out ? help Back to Top
Phytozome	Bostr.27991s0037.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]