PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27991s0020.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YB
Protein Properties Length: 245aa    MW: 27139.6 Da    PI: 4.0267
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27991s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB38.23.5e-1210100792
                 NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +lP+a v r++k+ l +     +  i k+a     e +  fi ++++ a+d c+  +r+t+++dd++ al ++ f +++eplk+  + +
  Bostr.27991s0020.1.p  10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDFCKDARRQTMKADDVFKALEEMEFAEFLEPLKASREDF 98 
                           69**********999752222356899********************************************************977777 PP

                 NF-YB  91 re 92 
                           ++
  Bostr.27991s0020.1.p  99 KK 100
                           65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.1E-71079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.6E-231099IPR009072Histone-fold
SuperFamilySSF471136.48E-1812101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
FCKDARRQTM KADDVFKALE EMEFAEFLEP LKASREDFKK KNAGKKAAGG SAASKPAGGA  120
ATKPKETKKR KQEGPSTQKD ARKSKIDEEN NKNDEEHEND NTEEENGNNE ENENDDENTE  180
ENGNDEENEK DDEGNSMEEN GNENDESGNE ENSMEENGSG NGDDNDNDNS NSSGEEVEGD  240
EEDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27991s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-148BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640708.11e-100DNA polymerase epsilon subunit 3
TrEMBLA0A1J3FZQ22e-87A0A1J3FZQ2_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRINGBostr.27991s0020.1.p1e-171(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.16e-59nuclear factor Y, subunit B11