PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.27991s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | G2-like | ||||||||
Protein Properties | Length: 169aa MW: 19249 Da PI: 10.0342 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.2 | 7.8e-28 | 81 | 132 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl+Wtp+LH+rFv+av +L +++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Bostr.27991s0013.1.p 81 RLVWTPQLHKRFVDAVGHL-VIKNAVPKTIMQLMSVQGLTRENVASHLQKYRL 132 9******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.2E-17 | 76 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-27 | 78 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-22 | 81 | 133 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MREDNPNWFL RWEDELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK KIASDDSNSS 60 TNDYEFGLIG GEPARTLKRL RLVWTPQLHK RFVDAVGHLV IKNAVPKTIM QLMSVQGLTR 120 ENVASHLQKY RLAREYEAPL RVHSKKKARF FPVEHQNPTA NALNDKER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 4e-27 | 79 | 132 | 1 | 54 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.27991s0013.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC002409 | 1e-44 | AC002409.3 Arabidopsis thaliana chromosome 2 clone T20B5 map CIC11C08, complete sequence. | |||
GenBank | AC004261 | 1e-44 | AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence. | |||
GenBank | AY072381 | 1e-44 | AY072381.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds. | |||
GenBank | BT000098 | 1e-44 | BT000098.1 Arabidopsis thaliana unknown protein (At2g40970) mRNA, complete cds. | |||
GenBank | CP002685 | 1e-44 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181630.1 | 2e-63 | Homeodomain-like superfamily protein | ||||
Swissprot | O22210 | 2e-64 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A178VYV1 | 4e-62 | A0A178VYV1_ARATH; MYBC1 | ||||
STRING | Bostr.27991s0013.1.p | 1e-122 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40970.1 | 7e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.27991s0013.1.p |
Publications ? help Back to Top | |||
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