PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.27895s0126.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | LBD | ||||||||
Protein Properties | Length: 278aa MW: 30549.5 Da PI: 4.5318 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++lp+++re++++sl+yeAear+rdP+yG+vg+i+ lqq ++ Bostr.27895s0126.2.p 5 PCAACKLLRRKCTQECVFAPYFPPTNPQKFICVHRVFGASNVTKILNDLPPDQREATVNSLFYEAEARIRDPIYGCVGLISFLQQYHKK 93 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 ++++l+++kee Bostr.27895s0126.2.p 94 VQQDLVTAKEE 104 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 5.6E-105 | 2 | 277 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 26.719 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFICVHRV FGASNVTKIL NDLPPDQREA 60 TVNSLFYEAE ARIRDPIYGC VGLISFLQQY HKKVQQDLVT AKEELAGYMG PDAVLPPPYL 120 PPLGNNPPPN FMMSMEGMPP GLIPQGEPLM IREPNFSQQH QPQDEQLQFI ASDAQRMAAM 180 ILDRGDQQGM FNGYGIDNNG SVTATGYNQT DVNDHGAGGS LSGPSLSLGS FGDPYQMGQE 240 TEHGHINHDQ LQTQLMLQPP LQEGQEQTEE GQFLMPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-44 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-44 | 2 | 108 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.27895s0126.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473835 | 0.0 | AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds. | |||
GenBank | AC003040 | 0.0 | AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence. | |||
GenBank | AC004482 | 0.0 | AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880519.1 | 0.0 | LOB domain-containing protein 10 | ||||
Refseq | XP_020883060.1 | 0.0 | LOB domain-containing protein 10 | ||||
Swissprot | O64836 | 1e-177 | LBD10_ARATH; LOB domain-containing protein 10 | ||||
TrEMBL | D7LG10 | 0.0 | D7LG10_ARALL; LOB domain family protein | ||||
STRING | Bostr.27895s0126.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 1e-141 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.27895s0126.2.p |
Publications ? help Back to Top | |||
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