PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.27895s0126.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 278aa MW: 30549.5 Da PI: 4.5318

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.27895s0126.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.5	2e-42	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++lp+++re++++sl+yeAear+rdP+yG+vg+i+ lqq ++ Bostr.27895s0126.1.p 5 PCAACKLLRRKCTQECVFAPYFPPTNPQKFICVHRVFGASNVTKILNDLPPDQREATVNSLFYEAEARIRDPIYGCVGLISFLQQYHKK 93 7************************************************************************************** PP DUF260 90 lkaelallkee 100 ++++l+++kee Bostr.27895s0126.1.p 94 VQQDLVTAKEE 104 ****99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	5.6E-105	2	277	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	26.719	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFICVHRV FGASNVTKIL NDLPPDQREA 60 TVNSLFYEAE ARIRDPIYGC VGLISFLQQY HKKVQQDLVT AKEELAGYMG PDAVLPPPYL 120 PPLGNNPPPN FMMSMEGMPP GLIPQGEPLM IREPNFSQQH QPQDEQLQFI ASDAQRMAAM 180 ILDRGDQQGM FNGYGIDNNG SVTATGYNQT DVNDHGAGGS LSGPSLSLGS FGDPYQMGQE 240 TEHGHINHDQ LQTQLMLQPP LQEGQEQTEE GQFLMPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.27895s0126.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473835	0.0	AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds.
GenBank	AC003040	0.0	AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence.
GenBank	AC004482	0.0	AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880519.1	0.0	LOB domain-containing protein 10
Refseq	XP_020883060.1	0.0	LOB domain-containing protein 10
Swissprot	O64836	1e-177	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	D7LG10	0.0	D7LG10_ARALL; LOB domain family protein
STRING	Bostr.27895s0126.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-141	LOB domain-containing protein 10

Link Out ? help Back to Top
Phytozome	Bostr.27895s0126.1.p

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]