PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0015.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 403aa    MW: 46600.6 Da    PI: 9.9879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3421.7e-13691196
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                          ffk l     + s+ l++p  f+ ++ +g   e+kt  l++  s   W+vk+  ++++    lt+GWkeF+ +++L+ gD+vvF+ +  ++
  Bostr.27895s0015.1.p  6 FFKPL--LPGFHSH-LTIPVAFFLKYiKGR-YEQKTAELRSdASKIIWNVKI--DGQR----LTDGWKEFALSHDLRIGDIVVFRQE--RD 84
                          66666..5667777.***********7444.4567888888588899*****..8888....***********************44..45 PP

                          E..EEEE CS
                    B3 90 felvvkv 96
                            ++v++
  Bostr.27895s0015.1.p 85 LAFHVTL 91
                          5457766 PP
2B375.27.6e-24125214495
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++ +l+ + l+lpk+f++++g++++++ +++l++e+grsW++ l+ +k+ g+ ++++GW++F++angL++g +++Fkl++ ++++l
  Bostr.27895s0015.1.p 125 ANITPATLRYDTLYLPKRFVRTNGLDTRCG-EMILMNEKGRSWTLDLKQKKSCGTSYIRRGWRSFCHANGLRAGSIITFKLIK-EGGSL 211
                           5678899999****************9987.****************99999999**************************99.66666 PP

                           EEE CS
                    B3  93 vvk 95 
                           v++
  Bostr.27895s0015.1.p 212 VLR 214
                           665 PP
3B349.48.2e-16283378399
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           + ++++++   + ++lp +f++ +g++ke  +++tl d++g +W+ kl   + ks+r  + +GWk+F +an +  +++++++l++++++
  Bostr.27895s0015.1.p 283 TLTLKPYSILCSVMRLPVPFTRINGINKE--TKMTLLDKHGMKWSTKLHLeDDKSKRLRMVGGWKGFFQANCVTLNESMILELIWEEDT 369
                           55666777777789*******99998865..58***************778999999******************************** PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                           ++v+k+++k
  Bostr.27895s0015.1.p 370 SCVLKFRSK 378
                           9**999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-17399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-183106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378395IPR003340B3 DNA binding domain
CDDcd100172.55E-13592No hitNo description
SMARTSM010191.6E-20695IPR003340B3 DNA binding domain
PfamPF023621.4E-81488IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-23115215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-22120222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-22122215No hitNo description
PROSITE profilePS5086316.44122219IPR003340B3 DNA binding domain
SMARTSM010194.8E-29123219IPR003340B3 DNA binding domain
PfamPF023622.0E-22124215IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-17273378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-18275377IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-11280376No hitNo description
SMARTSM010194.7E-22281379IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97281378IPR003340B3 DNA binding domain
PfamPF023624.1E-15281378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLTI PVAFFLKYIK GRYEQKTAEL RSDASKIIWN VKIDGQRLTD  60
GWKEFALSHD LRIGDIVVFR QERDLAFHVT LLGPSCWKIQ RKKKTKKNTR RETESSSLDP  120
SCFVANITPA TLRYDTLYLP KRFVRTNGLD TRCGEMILMN EKGRSWTLDL KQKKSCGTSY  180
IRRGWRSFCH ANGLRAGSII TFKLIKEGGS LVLRLTPNEA KKEEEEEECS EANEVESLST  240
DQESDEESSH DEKISQECSR RKEKKHRLMW NASSSPSENR FVTLTLKPYS ILCSVMRLPV  300
PFTRINGINK ETKMTLLDKH GMKWSTKLHL EDDKSKRLRM VGGWKGFFQA NCVTLNESMI  360
LELIWEEDTS CVLKFRSKSS IPDQRRTTYR LGSIERIFGK EK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106QRKKKTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0015.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014115.11e-180putative B3 domain-containing protein REM15 isoform X1
SwissprotQ8GYM41e-140REM14_ARATH; B3 domain-containing protein REM14
TrEMBLR0HTE71e-170R0HTE7_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.27895s0015.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-117B3 family protein