PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0014.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 306aa    MW: 34523.5 Da    PI: 8.0951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-142771899
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          lp+ f++e+g++  +++++ l  ++g +W  kli ++k+ ++ ++kGWk+Fvk+n+Lk   ++++kl++ +++++v++++++
  Bostr.27895s0014.1.p  2 LPRLFLRENGIN--KPVEMYLLGRDGTKWLTKLILDNKG-TMKMRKGWKDFVKENDLK--SSFTLKLIW-EDTTPVLSLCSA 77
                          8*********99..789****************988886.5579*************9..579999999.88899*999986 PP
2B349.48.5e-161021732398
                           .HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  23 aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +e++++  ++ t+ l d++g +W  +l+ r k+g++ l+kGWkeF+kan++k g++++ +l++ +++++++++f 
  Bostr.27895s0014.1.p 102 SRENNIN--KPGTIYLLDTDGTKWLTNLN-RDKKGTMSLGKGWKEFAKANDIKIGESFTMELIW-EDTTPMLSLFH 173
                           3444555..5669***************3.44444589**************************.88889998875 PP
3B3505.3e-16209297598
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           lt++dv k + l lp +f+++ +++k +  ++tl +e+g +W+ +l    ++g++ l++GWk+F++ang+k g  ++++++  +++++v
  Bostr.27895s0014.1.p 209 LTHEDV-KACKLQLPSQFMKATDINKLG--KITLLSENGMEWSGYL--LSRDGTVALGNGWKGFCEANGVKLGQAFTLEFVYVQDTTPV 292
                           444454.5677********999999765..8***************..99999**************************998899999* PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           +k+++
  Bostr.27895s0014.1.p 293 LKFCS 297
                           99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.026178IPR003340B3 DNA binding domain
SMARTSM010193.9E-12278IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-13277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-14282IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-12276No hitNo description
PfamPF023622.4E-13277IPR003340B3 DNA binding domain
SMARTSM010193.4E-1689175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16100175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-15101173IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-14103173IPR003340B3 DNA binding domain
CDDcd100171.74E-14108172No hitNo description
PROSITE profilePS5086311.899112175IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-18199296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-18200296IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-12203284No hitNo description
PROSITE profilePS5086312.619204299IPR003340B3 DNA binding domain
SMARTSM010195.7E-20204299IPR003340B3 DNA binding domain
PfamPF023627.2E-15207297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
CLPRLFLREN GINKPVEMYL LGRDGTKWLT KLILDNKGTM KMRKGWKDFV KENDLKSSFT  60
LKLIWEDTTP VLSLCSAEST SDSEEQEEFS KAIDKENNKE ESRENNINKP GTIYLLDTDG  120
TKWLTNLNRD KKGTMSLGKG WKEFAKANDI KIGESFTMEL IWEDTTPMLS LFHTKSSSSK  180
ANEKESISPE PKIRDSSPTI KNRLVTLTLT HEDVKACKLQ LPSQFMKATD INKLGKITLL  240
SENGMEWSGY LLSRDGTVAL GNGWKGFCEA NGVKLGQAFT LEFVYVQDTT PVLKFCSLEA  300
KYKNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-107AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-107CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429448.11e-151PREDICTED: B3 domain-containing protein REM13-like isoform X1
SwissprotP0CAP59e-90REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A087GRW81e-111A0A087GRW8_ARAAL; Uncharacterized protein
TrEMBLV4L4F21e-114V4L4F2_EUTSA; Uncharacterized protein
STRINGBostr.27895s0014.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-84DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]