PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0013.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 875aa    MW: 98468.3 Da    PI: 8.3182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-1219891293
                          HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                           ++ +++p +f+ ++ +g    s    l++ +s ++Wevk+  ++++    +t+GW+eFv an+ + gD+vv +++g++ f  +
  Bostr.27895s0013.1.p 19 HTH-FTIPEDFFLKYiEGR---S-VADLKSdSSDKTWEVKM--SGRR----FTDGWEEFVVANDFRIGDVVVVRYVGDNVF--H 89
                          444.99*****99996444...2.3445443888*******..7776....9************************98777..4 PP
2B363.33.9e-20159252398
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                            +l+++ +l+++ l+lpk+f++++g+  ++  +++++d   rsW + l+++ +s+++++++GW++F+++ng k+g fv+Fkl+g ++++
  Bostr.27895s0013.1.p 159 VALVTALNLRTDKLYLPKHFTSSNGLTRKC-CEIVFTDGGERSWVLDLRFNESSDTFYISRGWRNFCDENGQKAGGFVMFKLVG-NGET 245
                           56788889999*************999655.6***************************************************9.5555 PP

                           .EEEEE- CS
                    B3  92 lvvkvfr 98 
                           lv++++ 
  Bostr.27895s0013.1.p 246 LVLSFCP 252
                           7888876 PP
3B352.77.7e-17326416197
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+  ++p+d+ + g l+l+ +f++e+g++k++  ++ l d++gr+W  +l    ++g++ l+kGWk+FvkangL++g   ++kl++ +e
  Bostr.27895s0013.1.p 326 FVRFTLPPDYARIGKLSLSAPFVRENGINKPG--EICLLDKDGRKWLTNLL-LDSKGTMSLGKGWKDFVKANGLETGF--TLKLIW-EE 408
                           56677899*******************99766..8***************5.55556789*****************5..566668.66 PP

                           E..EEEEE CS
                    B3  90 felvvkvf 97 
                           +++v++++
  Bostr.27895s0013.1.p 409 TTPVLSLC 416
                           66887776 PP
4B364.41.8e-20481575198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++ ++++++ +++rl+l+k f++e++++k++  ++tl  ++g + + +l  +k+ g++ +++GWk+Fvk+ngLk+gD++++kl++ ++
  Bostr.27895s0013.1.p 481 FVTLTITPSSVERNRLRLSKIFTKENDINKPG--MITLLGKDGIKHQTNLLLDKSNGSMAFGNGWKDFVKDNGLKTGDTFTLKLIW-ED 566
                           677888999999999************99766..8***************99**********************************.78 PP

                           E..EEEEE- CS
                    B3  90 felvvkvfr 98 
                           +++v++++ 
  Bostr.27895s0013.1.p 567 QTPVLSLCP 575
                           889999986 PP
5B363.14.4e-20648742199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f++  ++++++k++rl+l+ +fa+e++++k++  t+ l d++g +W  kl+ r ++g++ l++GWk+F+k n+Lk g++++ +l++ ++
  Bostr.27895s0013.1.p 648 FVTLKITPSSGKNNRLILSAQFARENSINKPG--TMYLLDTDGTKWLTKLQ-RDNKGTMSLGEGWKDFAKTNDLKLGESFTMELIW-ED 732
                           7788899*******************999766..8***************5.55556789**************************.78 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           +++ + ++r+
  Bostr.27895s0013.1.p 733 TTPILCLLRT 742
                           8888888775 PP
6B356.45.4e-18776866599
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            +++   k + l+lp +f++++g++k +  ++tl +e+  +W+ +l    ++g++ l++GWk+F+++ng+k g+++++++++++++++v
  Bostr.27895s0013.1.p 776 ALTPEDVKACKLILPSQFMKANGINKLG--KITLLSENEMEWSGYL--LSRDGTVALGNGWKGFCEDNGVKLGESFTLEFVNEQSTTPV 860
                           44555556677************99766..8***************..99999****************************999999** PP

                           EEEE-S CS
                    B3  94 vkvfrk 99 
                           +k+++ 
  Bostr.27895s0013.1.p 861 LKLCSP 866
                           ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-157100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-15794IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.8796IPR003340B3 DNA binding domain
CDDcd100172.25E-12891No hitNo description
SMARTSM010192.4E-181096IPR003340B3 DNA binding domain
PfamPF023622.6E-82088IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-21149253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-21154253IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-18157252No hitNo description
PROSITE profilePS5086314.819157253IPR003340B3 DNA binding domain
SMARTSM010191.0E-27158254IPR003340B3 DNA binding domain
PfamPF023622.1E-18158252IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-17319416IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-18321416IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-17324417No hitNo description
SMARTSM010193.7E-28326419IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14326419IPR003340B3 DNA binding domain
PfamPF023621.5E-15326416IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-24471581IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24477581IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-27481577IPR003340B3 DNA binding domain
CDDcd100171.37E-18481575No hitNo description
PfamPF023629.3E-20481576IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183481577IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-24645749IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-20647745IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.1E-29648743IPR003340B3 DNA binding domain
PfamPF023625.0E-19648742IPR003340B3 DNA binding domain
CDDcd100171.84E-17648741No hitNo description
PROSITE profilePS5086315.34648743IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-19767864IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19768864IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-26772867IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366772867IPR003340B3 DNA binding domain
PfamPF023626.7E-17772865IPR003340B3 DNA binding domain
CDDcd100179.09E-14777861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MATLRIHPQF FHTLVPGFHT HFTIPEDFFL KYIEGRSVAD LKSDSSDKTW EVKMSGRRFT  60
DGWEEFVVAN DFRIGDVVVV RYVGDNVFHV SDLGPNYSEI QDNVGKKLLK KRLHQVDFSS  120
NNGDVCDNEE LPIEKKAKKN SEEAEAVSSS SSADNSCFVA LVTALNLRTD KLYLPKHFTS  180
SNGLTRKCCE IVFTDGGERS WVLDLRFNES SDTFYISRGW RNFCDENGQK AGGFVMFKLV  240
GNGETLVLSF CPTESINDGR QRDCSEASRR ESVATKLSSE EENIAGEGSK DECSSLDSLM  300
DIEKKKYSPK RRGSSYSSYS PCHKRFVRFT LPPDYARIGK LSLSAPFVRE NGINKPGEIC  360
LLDKDGRKWL TNLLLDSKGT MSLGKGWKDF VKANGLETGF TLKLIWEETT PVLSLCCAES  420
NSDREQEEFS KAIEKQPLFI DTSNRDKNSN NENNKEGSRL WERKKNHRKW RDSIPSSQKQ  480
FVTLTITPSS VERNRLRLSK IFTKENDINK PGMITLLGKD GIKHQTNLLL DKSNGSMAFG  540
NGWKDFVKDN GLKTGDTFTL KLIWEDQTPV LSLCPAECSI DRKAGGGYSE TKRKSLPIEP  600
STCKKISKGK NIKDDNSKEK NNKESRSVDS ERNHLRGRDL TPPCQKQFVT LKITPSSGKN  660
NRLILSAQFA RENSINKPGT MYLLDTDGTK WLTKLQRDNK GTMSLGEGWK DFAKTNDLKL  720
GESFTMELIW EDTTPILCLL RTECSSSKSN RKESIFFEPK SKDSSPTIEN RFVTLALTPE  780
DVKACKLILP SQFMKANGIN KLGKITLLSE NEMEWSGYLL SRDGTVALGN GWKGFCEDNG  840
VKLGESFTLE FVNEQSTTPV LKLCSPETKY ENAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069541e-148AC006954.8 Arabidopsis thaliana chromosome 2 clone F25P17 map mi238, complete sequence.
GenBankCP0026851e-148CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639406.10.0B3 domain-containing protein REM13
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A1P8B2550.0A0A1P8B255_ARATH; B3 domain-containing protein REM13
STRINGBostr.27895s0013.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.10.0DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]