PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.27895s0006.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 214aa    MW: 23878.4 Da    PI: 9.1518
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.27895s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-15122210799
                           .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           p+   k++ l+lp +f++++g++k +  ++++  ++  +W   +  ++++     + GW++F++ang+k gD++ ++++ + ++++v+k
  Bostr.27895s0006.1.p 122 PE-DVKTCSLYLPSEFMKANGIDKLG--KIVMLGRNEMEWWWGYLLSRNG-ILAVGCGWRNFCEANGVKIGDSFSLEFMYKYNTTPVLK 206
                           44.456678***********999765..7***************555443.58899*********************998888889999 PP

                           EE-S CS
                    B3  96 vfrk 99 
                           ++ +
  Bostr.27895s0006.1.p 207 FCPN 210
                           9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.60E-10160No hitNo description
PROSITE profilePS5086310.602164IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-9163IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.33164IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-9258IPR015300DNA-binding pseudobarrel domain
PfamPF023627.2E-8259IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-16105211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-16113211IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.378115211IPR003340B3 DNA binding domain
SMARTSM010198.1E-18115211IPR003340B3 DNA binding domain
CDDcd100172.12E-11120209No hitNo description
PfamPF023621.2E-13121210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVTLLGKDGT RRLANLLREN SGRMSLGKGW IEFSKANDLK VGEYFTLESI WQNATPILNL  60
SNTKSKSAIR QHRGKFSEAS EKESVSTESS NGKEAEKDKN IVGKMDSSSV IENRLVILAL  120
APEDVKTCSL YLPSEFMKAN GIDKLGKIVM LGRNEMEWWW GYLLSRNGIL AVGCGWRNFC  180
EANGVKIGDS FSLEFMYKYN TTPVLKFCPN SKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.27895s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880608.11e-98B3 domain-containing protein REM-like 2
SwissprotF4IQL73e-95REML2_ARATH; B3 domain-containing protein REM-like 2
TrEMBLD7LIB92e-97D7LIB9_ARALL; Uncharacterized protein
STRINGBostr.27895s0006.1.p1e-155(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24696.11e-97B3 family protein