PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.27895s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 25220.9 Da PI: 9.9327 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.6e-15 | 22 | 97 | 11 | 96 |
HHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l +p f+ +h g + e+kt l++ s +W+vk+ ++++ l++GW +F+ a++L++gD+vvFk +e+elv++v Bostr.27895s0003.1.p 22 FTNH-LDIPVAFFLKHlvGRN--EGKTAELRSnASETTWKVKI--DGQR----LSNGWDDFAVAHDLRVGDIVVFK----QERELVFHV 97 5555.99*********87655..6678888886788*******..9888....***********************....445556655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.87E-18 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.462 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.56E-12 | 12 | 98 | No hit | No description |
SMART | SM01019 | 1.0E-17 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-10 | 23 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MANQPLYSPI NPHFFQPPLP GFTNHLDIPV AFFLKHLVGR NEGKTAELRS NASETTWKVK 60 IDGQRLSNGW DDFAVAHDLR VGDIVVFKQE RELVFHVSAL GPSCCEIQYG EDNPDEDKRA 120 FLVKKKIENR EKRFDKHYKK TLRFSTDFPT VKVPPDISDG FPIKKLSHFG CREAVGIFGQ 180 LIIKRRFSNR YKLSETQTFL RCLTDGCSTT YVRRRRFP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.27895s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880610.1 | 2e-65 | B3 domain-containing protein REM10 isoform X3 | ||||
Swissprot | P0DH85 | 9e-66 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
TrEMBL | D7LIC1 | 4e-64 | D7LIC1_ARALL; Transcriptional factor B3 family protein | ||||
STRING | Bostr.27895s0003.1.p | 1e-162 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-68 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.27895s0003.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|